View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1996_low_4 (Length: 538)
Name: NF1996_low_4
Description: NF1996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1996_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 18 - 515
Target Start/End: Original strand, 2618874 - 2619372
Alignment:
| Q |
18 |
gtagtgttcggaattgcagcctcatcaaaactttgggaacaaagaaagaactacataaaactatggtactgattttgcatcagttgattccactttagtc |
117 |
Q |
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| T |
2618874 |
gtagtgtttggaattgcagcctcatcaaaactttgggaacaaagaaagaactacataaaactatggtactgattttgcatcagttgattccactttagtc |
2618973 |
T |
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| Q |
118 |
aattggtcaatacatgattcgactaattatatatttt-ttggtgtaaacaggtacaatgagaagaaaatgagaggaatagtgtggatggacgacaatgtg |
216 |
Q |
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| T |
2618974 |
aattggtcaatacatgattcgactaattatatatttttttggtgtaaacaggtacaatgagaagaaaatgagaggaatagtgtggatggacgacaacgtg |
2619073 |
T |
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| Q |
217 |
aaaacaaatcgaaacgaaggtctaccaccggtgaaaatctcaaccgacacatcaaattttccatacacaaacaaacaaggccaccgttcagctattagaa |
316 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2619074 |
aaaacaaatccaaacgaaggtctaccaccggtgaaaatctcaaccgacacatcaaattttccatacacaaacaaacaaggccaccgttccgctattagaa |
2619173 |
T |
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| Q |
317 |
tctcacgcattgtttctgaaacgttgagattaggccttaaagatgtgaggtggtttgtaatgggagatgacgacacggtgtttgtgacgaataatttgat |
416 |
Q |
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| T |
2619174 |
tctcacgcattgtttctgaaacgttgagattaggccttaaagatgtgaggtggtttgtaatgggagatgacgacacggtgtttgtgacgaataatttgat |
2619273 |
T |
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| Q |
417 |
tagggttttgaataagtatgatcataagcagttttactatattgggagtttatcagagagtcatttgcagaatatatatttttcttatggtatggctta |
515 |
Q |
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| T |
2619274 |
tagggttttgaataagtatgatcataagcagttttactatattgggagtttatcagagagtcatttgcagaatatatatttttcttatggtatggctta |
2619372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 515
Target Start/End: Original strand, 11091929 - 11092085
Alignment:
| Q |
359 |
atgtgaggtggtttgtaatgggagatgacgacacggtgtttgtgacgaataatttgattagggttttgaataagtatgatcataagcagttttactatat |
458 |
Q |
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| T |
11091929 |
atgtgaggtggtttgtgatgggtgatgatgatacattttttgttgctgagaatttggttaatgttttgaagaaatatgatcataatcaattttattacat |
11092028 |
T |
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| Q |
459 |
tgggagtttatcagagagtcatttgcagaatatatatttttcttatggtatggctta |
515 |
Q |
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| T |
11092029 |
tggtagtaattcagagagtcatttgcagaatatttatttttcttataatatggctta |
11092085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 436 - 515
Target Start/End: Complemental strand, 41319937 - 41319858
Alignment:
| Q |
436 |
gatcataagcagttttactatattgggagtttatcagagagtcatttgcagaatatatatttttcttatggtatggctta |
515 |
Q |
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| T |
41319937 |
gatcataatcaattttattacattggaagtttatctgaaagtcatttgcagaatattttcttttcctatggtatggctta |
41319858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 359 - 399
Target Start/End: Original strand, 30748907 - 30748947
Alignment:
| Q |
359 |
atgtgaggtggtttgtaatgggagatgacgacacggtgttt |
399 |
Q |
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| T |
30748907 |
atgttaggtggtttgtaatgggagatgatgatacggtgttt |
30748947 |
T |
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