View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1996_low_5 (Length: 451)
Name: NF1996_low_5
Description: NF1996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1996_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 9 - 442
Target Start/End: Original strand, 19751192 - 19751624
Alignment:
| Q |
9 |
catcatcatcaagatgaaaaccaaataaaatgtagtaacttagggaagaagaagaaatctgagataatgaaaactgtttatcgaattgtgtcgagtttgt |
108 |
Q |
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| T |
19751192 |
catcatcatcaagatgaaaaccaaataaaatgtagtaacttagggaagaagaagaaatctgagaaaatgaaaactgtttatcgaattgtgtcgagtttgt |
19751291 |
T |
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| Q |
109 |
tacatttcatctatatttagaagtcattgttctaactagctattagatcttcctaccaattaacagctggcactaactactatatggttagattactcac |
208 |
Q |
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| T |
19751292 |
tacatttcatctatatatagaagtcattgttctaactagctattagatcttcctaccaattaacagctggcactaactactatatggttagattactcac |
19751391 |
T |
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| Q |
209 |
tttatgtacgatacactatagtaatagtgtagcttaatgctcaagttaactaataccgagttacagttttgcaggtttaacaccaatcaccacaaaattc |
308 |
Q |
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| T |
19751392 |
tctatgtaccatacactatagtaatagtgtagc-taaagctcaagttaactaataccgagttacagttttgcaggtttaacaacaatcaccacaaaattc |
19751490 |
T |
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| Q |
309 |
aaagtaattcctcaacctcccacaaaacagaacctgaaaccatatccctcgttgacaaacatggtgagaattcactgctatacatgaaaaaatatcccaa |
408 |
Q |
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| T |
19751491 |
aaagtaattcctcaacctcctacaaaacagaacctgaaaccatatccctcgttgacaaacatggtgagaattcactgctatgcatgaaaaaatatcccaa |
19751590 |
T |
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| Q |
409 |
ccaacattaaataatttggttaatgtccgagaat |
442 |
Q |
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| T |
19751591 |
ccaacactaaataatttggttaatgtccgagaat |
19751624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 11 - 171
Target Start/End: Original strand, 1820236 - 1820390
Alignment:
| Q |
11 |
tcatcatcaagatgaaaaccaaataaaatgtagtaacttagggaagaagaagaaatctgagataatgaaaactgtttatcgaattgtgtcgagtttgtta |
110 |
Q |
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| T |
1820236 |
tcatcatcataatgaaaaccaaagaaaatgcagaagcttat---agaagaagaaatctcagaaaattaaaa-tgtttatcgaattgtgttgagtttgtta |
1820331 |
T |
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| Q |
111 |
catttcatctatatttagaagtcattgttctaactagctattagatcttcctaccaattaa |
171 |
Q |
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| T |
1820332 |
cggttgatctatatatagaacctatagttctaactaac--ttagatcttccaaccaattaa |
1820390 |
T |
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