View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1996_low_7 (Length: 415)
Name: NF1996_low_7
Description: NF1996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1996_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 3 - 400
Target Start/End: Original strand, 30563643 - 30564040
Alignment:
| Q |
3 |
aggagaagcaaaggaaaaaataagccagatcaaaagtagctttagagttagctcatcaaaagcatcatgttatgctaaaggacaatgttagaagttcact |
102 |
Q |
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| T |
30563643 |
aggagaagaaaaagaaaaaataagccagatcaaaagtagctttagagttagctcatcaaaagcatcatgttatgctaaaggacaatgttagaagttcact |
30563742 |
T |
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| Q |
103 |
actgagtgaaacggatcagagtaaaaccttttttgccttgagatctttgattttacgtggagggagaatatcccaatctgtatacaagcttccagaatct |
202 |
Q |
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| T |
30563743 |
actgagtgaaacggatcagagtaaaaccttttttgccttgagatctttgattttacgaggagggagaatatcccaatctgtatacaagcttccagaatct |
30563842 |
T |
|
| Q |
203 |
cgctctctattatcaaccagaacactgtatgtagcatctggcctgagaatgaatgtgtagaaatgagttaacttgtcagtttcacactgcaggtccttct |
302 |
Q |
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| T |
30563843 |
cgctctctattatcaaccagaacactgtatgtagcatctggcctgagaatgaatgtgtagaaatgagttaacttgtcagtttcacactgcaggtccttct |
30563942 |
T |
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| Q |
303 |
ttaccgggtaattttgaccttggtaagagactatgacatggagcttctttgtgtctgttccacataaatctggtccaaacattacactgtagagaatt |
400 |
Q |
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| T |
30563943 |
ttaccgggtaattttgaccttggtaagagactatgacatggagcttctttgtgtctgttccacataaatctggtccaaacattacactgtagagaatt |
30564040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 128 - 384
Target Start/End: Original strand, 25486077 - 25486333
Alignment:
| Q |
128 |
accttttttgccttgagatctttgattttacgtggagggagaatatcccaatctgtatacaagcttccagaatctcgctctctattatcaaccagaacac |
227 |
Q |
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| T |
25486077 |
acctttttagctttgacatccttgattttccttggaggaaggatgtcccaatctgtgtacatgctaccaaaatctctttctcgattatcgacaaggacac |
25486176 |
T |
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| Q |
228 |
tgtatgtagcatctggcctgagaatgaatgtgtagaaatgagttaacttgtcagtttcacactgcaggtccttctttaccgggtaattttgaccttggta |
327 |
Q |
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|||| | ||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||| ||| ||||| | | || ||||| || || ||||| |
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| T |
25486177 |
tgtaggaggcatcaggcctcagaatgaatgtatagaaatgagttaatttgtcagtttcacactccagatcctttctaataggataattctgcccctggta |
25486276 |
T |
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| Q |
328 |
agagactatgacatggagcttctttgtgtctgttccacataaatctggtccaaacat |
384 |
Q |
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| T |
25486277 |
tgacaatataacatggagcttctttgtttgtgtaccacatagatccggtccaaacat |
25486333 |
T |
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