View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1996_low_9 (Length: 409)
Name: NF1996_low_9
Description: NF1996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1996_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 234
Target Start/End: Original strand, 32321167 - 32321395
Alignment:
| Q |
12 |
tacttcattacgaaaaatactttataaatctatattgtaatactcattgaggatttaatttttatagaagagacattaataattcccaaataagtaagat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32321167 |
tacttcattacgaaaaatactttataaatctatattgtaatactcattgaggatttaatttttatagaagagacattaataattcccaaataggtaagat |
32321266 |
T |
|
| Q |
112 |
aaaaattacgtttcgtgcttggttagaatttgcaggtttttcttcc---catgatatagtcatcccc---aataaagattcaaagcttgctgacatatat |
205 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32321267 |
aaaaattacgtttcgtgcttggttggaatttgcaggtttttcttcccatcatgatatagtcatccccaataataaagattcaaagcttgctgacatatat |
32321366 |
T |
|
| Q |
206 |
atgaggtagaagataattaatcaaaataa |
234 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
32321367 |
atgaggtagaagataattaatcaaaataa |
32321395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 298 - 394
Target Start/End: Original strand, 32321399 - 32321503
Alignment:
| Q |
298 |
agtaaatgttgacagttctgaatttctgga--------tagattcaaagaaaaattaacaatagatgatgatcatgtctgtaagtctgttggacttagtt |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32321399 |
agtaaatgttgacagttctgaatttctggatttgtggatagattcaaagaaaaattaacaatagatgatgatcatgtctgtaagtctgttggacttagtt |
32321498 |
T |
|
| Q |
390 |
ctgaa |
394 |
Q |
| |
|
||||| |
|
|
| T |
32321499 |
ctgaa |
32321503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University