View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19970_high_3 (Length: 452)
Name: NF19970_high_3
Description: NF19970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19970_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 16 - 436
Target Start/End: Complemental strand, 47826975 - 47826556
Alignment:
| Q |
16 |
attagcatgaactaacaaactaaaacataaagttagcattaaatcaataagtaatatactctgaactattactagtattattgtgtaaatggttaacata |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
47826975 |
attagcatgaactaacaaactaaaacataaagttagcattaaatcaataagtaatatactctgaactattactggtattattgtgtaaatggttaacata |
47826876 |
T |
|
| Q |
116 |
atgttagctcactgagtattttgatagtttattagggaccagatagatataagagaaaatgataattttaaatgtttagtcctagcatataataataact |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47826875 |
atgttagctcactgagtattttgatagtttattagggaccagata----taagagaaaatgataattttaaatgtttagtcctagcatataataataact |
47826780 |
T |
|
| Q |
216 |
ttggtgaagaagnnnnnnnnnt---tgacatactatccttttgtgtcccccgtacgggacatcttaatagtttcattttttcaatctctatctatatata |
312 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47826779 |
ttggtgaagaaaaaaaaaaaaaaagtgacatactatccttttgtgtcccccgtacgggacatcttaatagtttcattttttcaatctctatctatatata |
47826680 |
T |
|
| Q |
313 |
tacttgtagcagcatggattcattataaatatacttgagttataataataaacaaactaatttacctgattctccgcaagtcccatctgaatgattcccg |
412 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47826679 |
tacttgtagcagcatggagtcattataaatatacttgagttataataataaacaaactaatttacctgattctccgcaagtcccatctgaatgattcccg |
47826580 |
T |
|
| Q |
413 |
tgggattatgaattgggtgatagg |
436 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
47826579 |
tgggattatgaattgggtgatagg |
47826556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University