View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19971_high_11 (Length: 494)
Name: NF19971_high_11
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19971_high_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 13 - 479
Target Start/End: Original strand, 45350608 - 45351074
Alignment:
| Q |
13 |
aatatccctttggaattgggggaatgaatcttggccttccatcaactgcaaagagtaactttgtttgttgattaggatgcatttttaaagctgaagttct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45350608 |
aatatccctttggaattgggggaatgaatcttggccttccatcaactgcaaagagtaactttgtttgttgattaggatgcatttttaaagctgaagttct |
45350707 |
T |
|
| Q |
113 |
agttctccatacaaaagctgagagtgcttcaaaagttgaacattttttcaaaactccgtcttcggtggcttttttcttgagtgaatcaagcttctcagga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45350708 |
agttctccatacaaaagctgagagtgcttcaaaagttgaacattttttcaaaactccgtcttcggtggcttttttcttgagtgaatcaagcttctcagga |
45350807 |
T |
|
| Q |
213 |
ttgaaaaggaaggatttgtggataatgttttctccttcatagattttttctgtgtttgatgaatcttcaatttcatcaaattcatggtgttggaactcta |
312 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45350808 |
ttaaaaaggaaggatttgtggataatgttttctccttcgtagattttttctgtgtttgataaatcttcaatttcatcaaattcatggtgttggaactcta |
45350907 |
T |
|
| Q |
313 |
ctttgggaggatcacgtgatttgagtatggttctatcaagaaatggtggagtctttaagtctaaacctctagctgtttcagcccatgcattcacaaactc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45350908 |
ctttgggaggatcacgtgatttgagtatggttctatcaagaaatggtggagtctttaagtctaaacctctagctgtttcagcccatgcattcacaaactc |
45351007 |
T |
|
| Q |
413 |
catagcacatagtccatctttcatgcaatggatcatgttcagtcccaatgtgaatcctccacatttg |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45351008 |
catagcacatagtccatctttcatgcaatggatcatgttcagtcccaatgtgaatcctccacatttg |
45351074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 21 - 420
Target Start/End: Original strand, 40495358 - 40495760
Alignment:
| Q |
21 |
tttggaattgggggaatgaatcttggccttccatcaactgcaaagagtaactttgtttgttgattaggatgcatttttaaagctgaagttctagttctcc |
120 |
Q |
| |
|
||||| ||||| |||| ||||||| ||||||||||| ||||| |||| ||| | ||||||| ||||||| |||||| ||| |||||||| ||||| |
|
|
| T |
40495358 |
tttggtattggtggaacaaatcttgatcttccatcaacagcaaaaagtagcttcactagttgattgggatgcacttttaaggcttgagttctagctctcc |
40495457 |
T |
|
| Q |
121 |
atacaaaagctgagagtgcttcaaaagttgaacattttttcaaaactccgtcttcggtggcttttttcttgagtgaatcaagcttctcaggattgaaaag |
220 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||| ||| || ||||| ||||| ||||||||||| |||||||| | |||| || |
|
|
| T |
40495458 |
atacaaaagctgagagtgcttcaaaagtagaacactttttcacaacaccatcttctgtggcctttttcttgagaagttcaagcttgttctgattaaacca |
40495557 |
T |
|
| Q |
221 |
gaaggatttgtggataatgttttctccttcatagatt---ttttctgtgtttgatgaatcttcaatttcatcaaattcatggtgttggaactctactttg |
317 |
Q |
| |
|
||| || |||| ||||| | |||| | |||| ||| || | ||| | |||| ||||||||| |||||| ||||| || || |||||||| || |
|
|
| T |
40495558 |
gaatgacttgtatataatctcttcttcctcatgaattaatttgtttgtatctgataaatcttcaagttcatcgaattcgtgatgcgtgaactctatttgt |
40495657 |
T |
|
| Q |
318 |
ggaggatcacgtgatttgagtatggttctatcaagaaatggtggagtctttaagtctaaacctctagctgtttcagcccatgcattcacaaactccatag |
417 |
Q |
| |
|
|| || | ||||||||||||||| |||||||||||||||||||| | |||||||||| ||||| ||||| ||| |||| | |||||||| | ||||| |
|
|
| T |
40495658 |
ggggggttacgtgatttgagtattgttctatcaagaaatggtgggatttttaagtctagtcctcttgctgtgtcaccccaggagttcacaaattgcatag |
40495757 |
T |
|
| Q |
418 |
cac |
420 |
Q |
| |
|
||| |
|
|
| T |
40495758 |
cac |
40495760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University