View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19971_high_17 (Length: 423)
Name: NF19971_high_17
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19971_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 16 - 414
Target Start/End: Complemental strand, 7523912 - 7523514
Alignment:
| Q |
16 |
ataatttcaggtacttctatgtcatgtcctcatgttagtggaatcgccgcattgcttaggaaagcttatccagaatggtcaccagctgcaattaaatctg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7523912 |
ataatttcaggtacttctatgtcatgtcctcatgttagtggaatcgccgcgttgcttaggaaagcttatccagaatggtcaccagctgcaattaaatctg |
7523813 |
T |
|
| Q |
116 |
ctttgatgacaacagcttataatgttgataattctggtggaaaaattaaggatcttggaacaggtaaagagtcaaatccatttgttcatggagccggaca |
215 |
Q |
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| T |
7523812 |
ctttgatgacaacagcttataatgttgataattctggtggaaaaattaaggatcttggaacaggtaaagagtcaaatccatttgttcatggagccggaca |
7523713 |
T |
|
| Q |
216 |
tgttgatcctaataaagcacttaaccccggtttggtttatgatttaaacattaatgactatttagctttcctttgttcaattggttatgatgctaaggaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7523712 |
cgttgatcctaataaagcacttaaccccggtttggtttatgatttaaacattaatgactatttagctttcctttgttcaattggttatgatgctaaggaa |
7523613 |
T |
|
| Q |
316 |
attcagattttcactagagagccaactagttataatgtttgtgaaaatgaaaggaaatttactagtcctggtgatttgaattacccttcattctctgtg |
414 |
Q |
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| T |
7523612 |
attcagattttcactagagagccaactagttataatgtttgtgaaaatgaaaggaaatttactagtcctggtgatttgaattacccttcattctctgtg |
7523514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 3207959 - 3207919
Alignment:
| Q |
16 |
ataatttcaggtacttctatgtcatgtcctcatgttagtgg |
56 |
Q |
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|||||||||||||| || ||||||||||||||| ||||||| |
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| T |
3207959 |
ataatttcaggtacctcaatgtcatgtcctcatcttagtgg |
3207919 |
T |
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