View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19971_high_19 (Length: 412)

Name: NF19971_high_19
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19971_high_19
NF19971_high_19
[»] chr3 (2 HSPs)
chr3 (1-397)||(7052913-7053309)
chr3 (1-333)||(38939006-38939338)
[»] chr8 (1 HSPs)
chr8 (1-396)||(13378210-13378605)
[»] scaffold0256 (1 HSPs)
scaffold0256 (1-333)||(9326-9658)
[»] chr6 (16 HSPs)
chr6 (1-333)||(16781281-16781613)
chr6 (1-198)||(16987765-16987962)
chr6 (1-374)||(16837812-16838186)
chr6 (1-342)||(17069673-17070011)
chr6 (9-198)||(16788276-16788465)
chr6 (1-192)||(16797483-16797674)
chr6 (1-192)||(16658326-16658514)
chr6 (1-375)||(16867661-16868030)
chr6 (8-198)||(16844144-16844334)
chr6 (21-342)||(18805863-18806184)
chr6 (21-342)||(18872857-18873178)
chr6 (288-375)||(16843967-16844054)
chr6 (277-375)||(16658143-16658241)
chr6 (277-375)||(16788101-16788198)
chr6 (26-84)||(18870385-18870443)
chr6 (278-375)||(16987588-16987685)
[»] scaffold0133 (3 HSPs)
scaffold0133 (1-375)||(12983-13357)
scaffold0133 (1-374)||(8642-9015)
scaffold0133 (278-333)||(26946-27001)
[»] scaffold0144 (2 HSPs)
scaffold0144 (1-223)||(37773-37992)
scaffold0144 (277-375)||(37621-37719)
[»] scaffold0511 (1 HSPs)
scaffold0511 (53-189)||(9679-9815)
[»] chr5 (3 HSPs)
chr5 (97-135)||(17983905-17983943)
chr5 (8-36)||(30520597-30520625)
chr5 (8-36)||(30560937-30560965)
[»] chr1 (1 HSPs)
chr1 (97-135)||(7580780-7580818)
[»] chr4 (3 HSPs)
chr4 (149-189)||(7128965-7129005)
chr4 (149-189)||(7713951-7713991)
chr4 (149-189)||(7722239-7722279)


Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 7052913 - 7053309
Alignment:
1 agacaaagataaagagaagattgtcgagtttcttctgaggcatgctagtgacagtgaagaactctctatctatcccattgttggccacagtggatatgga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
7052913 agacaaagataaagagaagattgtcgagtttcttctgaggcatgctagtgacagtgaagaactctctatctatcccattgttggccacagtggatatgga 7053012  T
101 aaaacaacacttgctcaattggtctataacgatgaaagtgtaagcacccattttgacttgaaaatatgggtttgtgtttcagatgatttcagcatgatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
7053013 aaaacaacacttgctcaattggtctataacgatgaaagtgtaagcacccattttgacttgaaaatatgggtttgtgtttcagatgatttcagcatgatta 7053112  T
201 aaatcctacactccatcatagaatctgccacaggacaaaatcctaatctctcttctctagaatccatgcnnnnnnnggttcaagaagttttgcaaagcaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
7053113 aaatcctacactccatcatagaatctgccacaggacaaaatcctaatctctcttctctagaatccatgcaaaaaaaggttcaagaagttttgcaaagcaa 7053212  T
301 aaggtatttacttgtattagatgatgtttggaatgaagaccatggtaaatgggacaagttcaagtttttgttgcagtctgcaattacaaggaaaggt 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
7053213 aaggtatttacttgtattagatgatgtttggaatgaagaccatggtaaatggtacaagttcaagtttttgttgcagtctgcaattacaaggaaaggt 7053309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 38939006 - 38939338
Alignment:
1 agacaaagataaagagaagattgtcgagtttcttctgaggcatgctagtgacagtgaagaactctctatctatcccattgttggccacagtggatatgga 100  Q
    |||||||||||||||  | ||||| |||| |||||||||||||||||   |||||||||| |||||| ||||| |||||||||| |   |||||||||||    
38939006 agacaaagataaagaacaaattgttgagtatcttctgaggcatgctaacaacagtgaagatctctctgtctattccattgttggtctaggtggatatgga 38939105  T
101 aaaacaacacttgctcaattggtctataacgatgaaagtgtaagcacccattttgacttgaaaatatgggtttgtgtttcagatgatttcagcatgatta 200  Q
    |||||||||||||||||||||||||| ||| ||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
38939106 aaaacaacacttgctcaattggtctacaacaatgaaagcgtaaccacccattttgatttgaaaatatgggtttgtgtttcagatgatttcagcatgatga 38939205  T
201 aaatcctacactccatcatagaatctgccacaggacaaaatcctaatctctcttctctagaatccatgcnnnnnnnggttcaagaagttttgcaaagcaa 300  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||| |||   || | ||||| ||||        |||||||||||||||||||||||    
38939206 aaatcctacactccatcatagaatctgccactggacaaaatcataatttcttgactttggaatcaatgcaaaaaaaagttcaagaagttttgcaaagcaa 38939305  T
301 aaggtatttacttgtattagatgatgtttggaa 333  Q
    |||||||||||||||| | |||||||| |||||    
38939306 aaggtatttacttgtactggatgatgtgtggaa 38939338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 13378605 - 13378210
Alignment:
1 agacaaagataaagagaagattgtcgagtttcttctgaggcatgctagtgacagtgaagaactctctatctatcccattgttggccacagtggatatgga 100  Q
    |||||||||||||||  | ||||| |||| |||||| ||| |||| ||| |||| |||||  ||||| ||||| ||||||||||||   |||||||||||    
13378605 agacaaagataaagaacaaattgttgagtatcttctaagggatgcaagtaacagagaagatatctctgtctattccattgttggcctaggtggatatgga 13378506  T
101 aaaacaacacttgctcaattggtctataacgatgaaagtgtaagcacccattttgacttgaaaatatgggtttgtgtttcagatgatttcagcatgatta 200  Q
    ||||||||||||||||||||||| || ||||||||||  ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||  |    
13378505 aaaacaacacttgctcaattggtgtacaacgatgaaaacgtaagcacccactttgacttgaaaatatgggtttgtgtttctgatgatttcagtatgaaga 13378406  T
201 aaatcctacactccatcatagaatctgccacaggacaaaatcctaatctctcttctctagaatccatgcnnnnnnnggttcaagaagttttgcaaagcaa 300  Q
    |||||||||| || |||||||||||||  ||||||| |||||| ||||||   ||| | ||||| ||||        |||||||||||||||||||||||    
13378405 aaatcctacattctatcatagaatctgaaacaggacgaaatccgaatctcatgtctttggaatcaatgcaaaaaaaagttcaagaagttttgcaaagcaa 13378306  T
301 aaggtatttacttgtattagatgatgtttggaatgaagaccatggtaaatgggacaagttcaagtttttgttgcagtctgcaattacaaggaaagg 396  Q
    |||||||||||||||| |||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||| | ||  ||||||||||||||    
13378305 aaggtatttacttgtactagatgatgtgtggaatgaagaccatgttaaatgggaaaagttcaagtttttgttgcaatgtggcattacaaggaaagg 13378210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 9658 - 9326
Alignment:
1 agacaaagataaagagaagattgtcgagtttcttctgaggcatgctagtgacagtgaagaactctctatctatcccattgttggccacagtggatatgga 100  Q
    ||||||||||||||| || ||||| |||| ||||||||||||||||||  |||||||||| |||||| ||||| ||||||||||||   |||||||||||    
9658 agacaaagataaagaaaaaattgttgagtatcttctgaggcatgctagcaacagtgaagatctctctgtctattccattgttggcctaggtggatatgga 9559  T
101 aaaacaacacttgctcaattggtctataacgatgaaagtgtaagcacccattttgacttgaaaatatgggtttgtgtttcagatgatttcagcatgatta 200  Q
    ||||||||||||||||||||||| || ||||| ||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
9558 aaaacaacacttgctcaattggtttacaacgaagaaagcgtaaccacccattttgatttgaaaatatgggtttgtgtttcagatgatttcagcatgatga 9459  T
201 aaatcctacactccatcatagaatctgccacaggacaaaatcctaatctctcttctctagaatccatgcnnnnnnnggttcaagaagttttgcaaagcaa 300  Q
    ||||||||||||||||||||||||||||||| ||||||| || |||| |||   || | ||||| ||||        |||||||||||||||||||||||    
9458 aaatcctacactccatcatagaatctgccactggacaaagtcataatttcttgactttggaatcgatgcaaaaaaaagttcaagaagttttgcaaagcaa 9359  T
301 aaggtatttacttgtattagatgatgtttggaa 333  Q
    || ||||||||||||| | |||||||| |||||    
9358 aaagtatttacttgtactcgatgatgtgtggaa 9326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 168; Significance: 6e-90; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 16781613 - 16781281
Alignment:
1 agacaaagataaagagaagattgtcgagtttcttctgaggcatgctagtgacagtgaagaactctctatctatcccattgttggccacagtggatatgga 100  Q
    ||||| |||||||||  | ||||| |||| ||||||||||||||||||  | |||||||| |||||| ||||| ||||||||||||   |||||||||||    
16781613 agacagagataaagaacaaattgttgagtatcttctgaggcatgctagcaatagtgaagatctctctgtctattccattgttggcctaggtggatatgga 16781514  T
101 aaaacaacacttgctcaattggtctataacgatgaaagtgtaagcacccattttgacttgaaaatatgggtttgtgtttcagatgatttcagcatgatta 200  Q
    ||||||||||||||||||||||| || || |||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||| || |    
16781513 aaaacaacacttgctcaattggtatacaaggatgaaagcgtaaccacccattttgatttgaaaatatgggtttgtgtttcagatgatttcagcatcatga 16781414  T
201 aaatcctacactccatcatagaatctgccacaggacaaaatcctaatctctcttctctagaatccatgcnnnnnnnggttcaagaagttttgcaaagcaa 300  Q
    ||||||||||||| ||||||||||||||||| |||||||||| |||||||||  || ||||||  ||||        |||||||||||||||||||||||    
16781413 aaatcctacactctatcatagaatctgccactggacaaaatcataatctctcgactttagaattaatgcaaaaaaaagttcaagaagttttgcaaagcaa 16781314  T
301 aaggtatttacttgtattagatgatgtttggaa 333  Q
    || ||||||||||||| | |||||||| |||||    
16781313 aaagtatttacttgtactggatgatgtgtggaa 16781281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 16987962 - 16987765
Alignment:
1 agacaaagataaagagaagattgtcgagtttcttctgaggcatgctagtgacagtgaagaactctctatctatcccattgttggccacagtggatatgga 100  Q
    |||||||||||||||  ||||||| ||||||||||| || |||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||||||    
16987962 agacaaagataaagaacagattgtagagtttcttctaagacatgctagtgacagtgaaaaactctctgtctattccattgttggccacggtggatatgga 16987863  T
101 aaaacaacacttgctcaattggtctataacgatgaaagtgtaagcacccattttgacttgaaaatatgggtttgtgtttcagatgatttcagcatgat 198  Q
    |||||| ||||||||||| ||||||  || |||||||||||||  || ||||||||||||||||||||||| |||||||| ||||||||||| |||||    
16987862 aaaacagcacttgctcaaatggtcttcaatgatgaaagtgtaaagacacattttgacttgaaaatatgggtgtgtgtttctgatgatttcagtatgat 16987765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 16838186 - 16837812
Alignment:
1 agacaaagataaagagaagattgtcgagtttcttctgaggcatgctagtgacagtgaagaactctctatctatcccattgttggccacagtggatatgga 100  Q
    |||||||||||||||| ||||||| ||||||||| |  ||||||||||| ||||||||||||||||| ||||| ||||||||||     | ||| | |||    
16838186 agacaaagataaagagcagattgtagagtttcttatagggcatgctagtaacagtgaagaactctctgtctattccattgttggtgttggcggacaagga 16838087  T
101 aaaacaacacttgctcaattggtctataacgatgaaagtgtaagcacccattttgacttgaaaatatgggtttgtgtttcagatgatttcagcatgatta 200  Q
    ||||||||||| |||||| ||||||| || |||||||| ||||  || ||||||||||||||||||||||| |||||||| |||||||||||  |||| |    
16838086 aaaacaacactcgctcaagtggtctacaatgatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatga 16837987  T
201 aaatcctacactccatcatagaatctgccacaggacaaaatccta-atctctcttctctagaatccatgcnnnnnnnggttcaagaagttttgcaaagca 299  Q
    ||||  || | ||||||||||||    |||  ||| ||||  ||| ||||||  ||| |||| ||| |||       |||||||||| ||||||||| ||    
16837986 aaattttagagtccatcatagaaaacaccattggaaaaaaatctagatctcttgtctttagagtccttgcgaaaaaaggttcaagaaattttgcaaaaca 16837887  T
300 aaaggtatttacttgtattagatgatgtttggaatgaagaccatggtaaatgggacaagttcaagtttttgttgc 374  Q
    |||||||||| |||||  | |||||||| |||| ||| ||||| |  |||||| | | |||||||| ||||||||    
16837886 aaaggtatttgcttgttcttgatgatgtgtggagtgatgaccaagtgaaatggaatacgttcaagtctttgttgc 16837812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 17070011 - 17069673
Alignment:
1 agacaaagataaagagaagattgtcgagtttcttctgaggcatgctagtgacagtgaagaactctctatctatcccattgttggccacagtggatatgga 100  Q
    |||||||||||||||| ||||||| ||||||||||| |   |||||||||||||||||||||||||| ||||| ||||||||||     | ||| | |||    
17070011 agacaaagataaagagcagattgtagagtttcttctaa---atgctagtgacagtgaagaactctctgtctattccattgttggtgttggcggacaagga 17069915  T
101 aaaacaacacttgctcaattggtctataacgatgaaagtgtaagcacccattttgacttgaaaatatgggtttgtgtttcagatgatttcagcatgatta 200  Q
    ||||||||||| |||||| ||||||| || |||||||| ||||  || ||||||||||||||||||||||| |||||||| |||||||||||  |||| |    
17069914 aaaacaacactcgctcaaatggtctacaatgatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatga 17069815  T
201 aaatcctacactccatcatagaatctgccacaggacaaaatcctaatctctcttctctagaatccatgcnnnnnnnggttcaagaagttttgcaaagcaa 300  Q
    ||||  || | ||||||||||||    |||  ||| ||||||   ||||||  ||| |||| || | ||       |||||||||| |||||||||||||    
17069814 aaattttagagtccatcatagaaaacaccattggaaaaaatctagatctcttgtctttagagtcaaggcaaaaaaaggttcaagaaattttgcaaagcaa 17069715  T
301 aaggtatttacttgtattagatgatgtttggaatgaagacca 342  Q
    ||||||||| |||||  | |||||||| |||| ||| |||||    
17069714 aaggtatttgcttgttcttgatgatgtgtggagtgatgacca 17069673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 9 - 198
Target Start/End: Complemental strand, 16788465 - 16788276
Alignment:
9 ataaagagaagattgtcgagtttcttctgaggcatgctagtgacagtgaagaactctctatctatcccattgttggccacagtggatatggaaaaacaac 108  Q
    |||||||| |||||||  |||||| ||| | |||| ||| |||||  |||||||||||| ||||| ||||||||||||   ||| |||||||||||||||    
16788465 ataaagagcagattgtaaagtttcctctaaagcatactactgacaaagaagaactctctgtctattccattgttggcctaggtgaatatggaaaaacaac 16788366  T
109 acttgctcaattggtctataacgatgaaagtgtaagcacccattttgacttgaaaatatgggtttgtgtttcagatgatttcagcatgat 198  Q
    |||||||||||| || || ||| ||||||| ||||| | |||||||||| ||||||||||| ||| ||||||||||||||||||||||||    
16788365 acttgctcaattagtatacaacaatgaaagagtaagaaaccattttgacctgaaaatatggatttttgtttcagatgatttcagcatgat 16788276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 16797674 - 16797483
Alignment:
1 agacaaagataaagagaagattgtcgagtttcttctgaggcatgctagtgacagtgaagaactctctatctatcccattgttggccacagtggatatgga 100  Q
    |||||||||||||||  ||||||| |||||||||||  |||||||||||  |||||||||||||||| ||||| ||||||||||     | ||| | |||    
16797674 agacaaagataaagaacagattgtagagtttcttctagggcatgctagtaccagtgaagaactctctgtctattccattgttggtgttggcggacaagga 16797575  T
101 aaaacaacacttgctcaattggtctataacgatgaaagtgtaagcacccattttgacttgaaaatatgggtttgtgtttcagatgatttcag 192  Q
    ||||||||||| |||||| ||||||| || |||||||| ||||  || ||||||||||||||||||||||| |||||||| |||||||||||    
16797574 aaaacaacactcgctcaagtggtctacaatgatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcag 16797483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 16658514 - 16658326
Alignment:
1 agacaaagataaagagaagattgtcgagtttcttctgaggcatgctagtgacagtgaagaactctctatctatcccattgttggccacagtggatatgga 100  Q
    |||||||||||||||| ||||||| ||||||||||| |   ||||||| |||||||||||||||||| ||| | ||||||||||     | ||| | |||    
16658514 agacaaagataaagagcagattgtagagtttcttctaa---atgctagcgacagtgaagaactctctgtctgttccattgttggtgttggcggacaagga 16658418  T
101 aaaacaacacttgctcaattggtctataacgatgaaagtgtaagcacccattttgacttgaaaatatgggtttgtgtttcagatgatttcag 192  Q
    ||||||||||| |||||| ||||||  || |||||||| ||||  || ||||||||||||||||||||||| |||||||| |||||||||||    
16658417 aaaacaacactcgctcaaatggtcttcaatgatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcag 16658326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 16867661 - 16868030
Alignment:
1 agacaaagataaagagaagattgtcgagtttcttctgaggcatgctagtgacagtgaagaactctctatctatcccattgttggccacagtggatatgga 100  Q
    |||||||||||||||| ||||||| ||||||||||| |   ||||||| |||||||||||||||||| ||| | ||||||||||     | ||| | |||    
16867661 agacaaagataaagagcagattgtagagtttcttctaa---atgctagcgacagtgaagaactctctgtctgttccattgttggtgttggcggacaagga 16867757  T
101 aaaacaacacttgctcaattggtctataacgatgaaagtgtaagcacccattttgacttgaaaatatgggtttgtgtttcagatgatttcagcatgatta 200  Q
    ||||||||||| |||||| ||||||  || |||||||| ||||  || ||||||||||||||||||||||  |||||||| || ||||||||  |||| |    
16867758 aaaacaacactcgctcaagtggtcttcaatgatgaaagggtaaaaacacattttgacttgaaaatatggg--tgtgtttcggacgatttcagtttgatga 16867855  T
201 aaatcctacactccatcatagaatctgccacaggacaaaatcctaatctctcttctctagaatccatgcnnnnnnnggttcaagaagttttgcaaagcaa 300  Q
    ||||  || | ||||||| ||||    |||  ||| ||||||   ||||||  ||| ||||| || ||        |||||||||| ||||||||| |||    
16867856 aaattttagagtccatcacagaaaacaccattggaaaaaatctagatctcttgtctttagaaaccttgagaaaaaaggttcaagaaattttgcaaaacaa 16867955  T
301 aaggtatttacttgtattagatgatgtttggaatgaagaccatggtaaatgggacaagttcaagtttttgttgca 375  Q
    || |||||| |||||  | ||||||||||||| ||||||||| |  |||||| | ||||| |||| |||||||||    
16867956 aaagtatttgcttgttcttgatgatgtttggagtgaagaccaagagaaatggaataagttaaagtctttgttgca 16868030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 8 - 198
Target Start/End: Complemental strand, 16844334 - 16844144
Alignment:
8 gataaagagaagattgtcgagtttcttctgaggcatgctagtgacagtgaagaactctctatctatcccattgttggccacagtggatatggaaaaacaa 107  Q
    ||||| || ||| |||| ||||||||||| |||||||||| |||||  |||| ||||||| ||||| |||||||||| ||  ||||||||||||| |||     
16844334 gataaggaaaaggttgttgagtttcttctaaggcatgctattgacaaggaaggactctctgtctattccattgttggtcatggtggatatggaaagacag 16844235  T
108 cacttgctcaattggtctataacgatgaaagtgtaagcacccattttgacttgaaaatatgggtttgtgtttcagatgatttcagcatgat 198  Q
    ||||||||||| ||||||  || ||||| || ||||  || ||||||   ||||||||||||||||||||||| |||||||| || |||||    
16844234 cacttgctcaactggtcttcaatgatgagagggtaaatactcattttcctttgaaaatatgggtttgtgtttctgatgattttagtatgat 16844144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 21 - 342
Target Start/End: Original strand, 18805863 - 18806184
Alignment:
21 ttgtcgagtttcttctgaggcatgctagtgacagtgaagaactctctatctatcccattgttggccacagtggatatggaaaaacaacacttgctcaatt 120  Q
    |||| ||||||||||| || ||||||   || ||||||||||||||| ||||| ||||||||||     ||||  | ||||||||||||||||||||| |    
18805863 ttgttgagtttcttctaagtcatgctgtcgatagtgaagaactctctgtctattccattgttggtgttggtgggcaaggaaaaacaacacttgctcaagt 18805962  T
121 ggtctataacgatgaaagtgtaagcacccattttgacttgaaaatatgggtttgtgtttcagatgatttcagcatgattaaaatcctacactccatcata 220  Q
    ||| |  || |||||||| |||   || || ||| |||||||||||||||| |||||||| || ||||| || ||||| ||| |  | || |||||||||    
18805963 ggtattcaatgatgaaagggtagatacacactttaacttgaaaatatgggtgtgtgtttctgaggattttagtatgatgaaagttttgcagtccatcata 18806062  T
221 gaatctgccacaggacaaaatcctaatctctcttctctagaatccatgcnnnnnnnggttcaagaagttttgcaaagcaaaaggtatttacttgtattag 320  Q
    ||||| |||   ||| ||| |||  ||||||| ||| ||||||| ||||        |||||| || ||||||||| |||||||||| |||||||  | |    
18806063 gaatccgccgttggaaaaagtccagatctctcgtctttagaatcaatgcaaaaggaagttcaaaaaattttgcaaaacaaaaggtatctacttgttcttg 18806162  T
321 atgatgtttggaatgaagacca 342  Q
    ||||||| ||||||||||||||    
18806163 atgatgtgtggaatgaagacca 18806184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 21 - 342
Target Start/End: Original strand, 18872857 - 18873178
Alignment:
21 ttgtcgagtttcttctgaggcatgctagtgacagtgaagaactctctatctatcccattgttggccacagtggatatggaaaaacaacacttgctcaatt 120  Q
    |||| ||||||||||| || ||||||   || ||||||||||||||| ||||| ||||||||||     ||||  | ||||||||||||||||||||| |    
18872857 ttgttgagtttcttctaagtcatgctgtcgatagtgaagaactctctgtctattccattgttggtgttggtgggcaaggaaaaacaacacttgctcaagt 18872956  T
121 ggtctataacgatgaaagtgtaagcacccattttgacttgaaaatatgggtttgtgtttcagatgatttcagcatgattaaaatcctacactccatcata 220  Q
    |||||  || |||||||| |||   || || ||| |||||||||||||||| |||||||| || ||||| || ||||| ||| |  | || |||||||||    
18872957 ggtcttcaatgatgaaagggtagatacacactttaacttgaaaatatgggtgtgtgtttctgaggattttagtatgatgaaagttttgcagtccatcata 18873056  T
221 gaatctgccacaggacaaaatcctaatctctcttctctagaatccatgcnnnnnnnggttcaagaagttttgcaaagcaaaaggtatttacttgtattag 320  Q
    |||||  ||   ||| |||||||  ||||||| ||| ||||||| ||||       |||| || |  ||||||||| |||||||||| |||||||  | |    
18873057 gaatccaccgatggaaaaaatccagatctctcgtctttagaatcaatgcaaaagaaggttaaaaatattttgcaaaacaaaaggtatctacttgttcttg 18873156  T
321 atgatgtttggaatgaagacca 342  Q
    ||||||| ||||||||||||||    
18873157 atgatgtgtggaatgaagacca 18873178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 375
Target Start/End: Complemental strand, 16844054 - 16843967
Alignment:
288 ttttgcaaagcaaaaggtatttacttgtattagatgatgtttggaatgaagaccatggtaaatgggacaagttcaagtttttgttgca 375  Q
    ||||||||| ||||||||||||||||||  | || ||||||||||||||||||||   ||||||||| ||||||| || ||| |||||    
16844054 ttttgcaaaacaaaaggtatttacttgtccttgacgatgtttggaatgaagaccaacataaatgggataagttcatgtcttttttgca 16843967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 375
Target Start/End: Complemental strand, 16658241 - 16658143
Alignment:
277 ggttcaagaagttttgcaaagcaaaaggtatttacttgtattagatgatgtttggaatgaagaccatggtaaatgggacaagttcaagtttttgttgca 375  Q
    |||||||||  ||||||||| |||||||||||| |||||  | ||||||||||||| ||||||||| |  |||||| | ||||| |||| |||||||||    
16658241 ggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttggagtgaagaccaagagaaatggaataagttaaagtctttgttgca 16658143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 375
Target Start/End: Complemental strand, 16788198 - 16788101
Alignment:
277 ggttcaagaagttttgcaaagcaaaaggtatttacttgtattagatgatgtttggaatgaagaccatggtaaatgggacaagttcaagtttttgttgca 375  Q
    |||||||||| |||| |||| |||||||||| |||||||  | |||||||| |||||||||||||| |  |||||| | |||||||||| |||||||||    
16788198 ggttcaagaaatttt-caaaacaaaaggtatctacttgttcttgatgatgtgtggaatgaagaccaagagaaatggaataagttcaagtctttgttgca 16788101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 18870385 - 18870443
Alignment:
26 gagtttcttctgaggcatgctagtgacagtgaagaactctctatctatcccattgttgg 84  Q
    |||||||| || || ||||||  ||||||||||||||||||| ||||| ||||||||||    
18870385 gagtttctgctaagtcatgctcttgacagtgaagaactctctttctattccattgttgg 18870443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 375
Target Start/End: Complemental strand, 16987685 - 16987588
Alignment:
278 gttcaagaagttttgcaaagcaaaaggtatttacttgtattagatgatgtttggaatgaagaccatggtaaatgggacaagttcaagtttttgttgca 375  Q
    ||||||||| || | |||| ||||||||||||||||||  | |||||||| |||| ||||||||  |  |||||| | |||||||||| | |||||||    
16987685 gttcaagaaattctacaaaacaaaaggtatttacttgttcttgatgatgtgtggactgaagaccgagagaaatggaataagttcaagtctgtgttgca 16987588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 13357 - 12983
Alignment:
1 agacaaagataaagagaagattgtcgagtttcttctgaggcatgctagtgacagtgaagaactctctatctatcccattgttggccacagtggatatgga 100  Q
    |||||||||||||||  ||||||| |||||||| || ||||| || ||||| ||||||||||||||| ||||| |||||||||||||| |||||||||||    
13357 agacaaagataaagaacagattgtagagtttctgctaaggcacgccagtgagagtgaagaactctctgtctattccattgttggccacggtggatatgga 13258  T
101 aaaacaacacttgctcaattggtctataacgatgaaagtgtaagcacccattttgacttgaaaatatgggtttgtgtttcagatgatttcagcatgatta 200  Q
    |||||||||||||||||| ||||||  || |||||||||||||  || ||||||||||||||||||||||| |||||||| ||||||||||| ||||| |    
13257 aaaacaacacttgctcaaatggtcttcaatgatgaaagtgtaaagacacattttgacttgaaaatatgggtgtgtgtttctgatgatttcagtatgatga 13158  T
201 aaatcctacactccatcatagaatctgccacaggacaaaatcctaatctctcttctctagaatccatgcnnnnnnnggttcaagaagttttgcaaagcaa 300  Q
    |  |  || | ||||||||||||    |||  ||| ||||||| |||||||| ||| |||| || ||||       |||||||||| ||||||||| |||    
13157 aggttttagagtccatcatagaagacaccattggaaaaaatccaaatctctcctctttagagtcaatgcgaaaaaaggttcaagaaattttgcaaaacaa 13058  T
301 aaggtatttacttgtattagatgatgtttggaatgaagaccatggtaaatgggacaagttcaagtttttgttgca 375  Q
    ||||||||| |||||  | |||||||| |||| ||||||||| |  |||||| | |||||||||| || ||||||    
13057 aaggtatttgcttgttcttgatgatgtgtggagtgaagaccaagagaaatggaataagttcaagtcttcgttgca 12983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 9015 - 8642
Alignment:
1 agacaaagataaagagaagattgtcgagtttcttctgaggcatgctagtgacagtgaagaactctctatctatcccattgttggccacagtggatatgga 100  Q
    |||||||||||||||| | ||||| |||||||||||  |||| ||| |||||||||||||||||||| ||||| | |||||||||||| |||||||||||    
9015 agacaaagataaagagcatattgtagagtttcttctacggcacgctggtgacagtgaagaactctctgtctattctattgttggccacggtggatatgga 8916  T
101 aaaacaacacttgctcaattggtctataacgatgaaagtgtaagcacccattttgacttgaaaatatgggtttgtgtttcagatgatttcagcatgatta 200  Q
    ||||||||||||||||||   ||||  || |||||||| ||||  || ||||||||||||||||||||||| |||||||| | |||| |||    ||| |    
8915 aaaacaacacttgctcaaacagtcttcaatgatgaaagggtaaagacacattttgacttgaaaatatgggtgtgtgtttctggtgatatcaatgcgatga 8816  T
201 aaatcctacactccatcatagaatctgccacaggacaaaatcctaatctctcttctctagaatccatgcnnnnnnnggttcaagaagttttgcaaagcaa 300  Q
    || |  || | ||||||||||||    |||  ||| |||||||  ||||||| ||| |||| || ||||       |||||||||| |||||||||  ||    
8815 aagttttagagtccatcatagaaaacaccattggaaaaaatccacatctctcgtctttagagtcaatgcaacaaaaggttcaagaaattttgcaaaaaaa 8716  T
301 aaggtatttacttgtattagatgatgtttggaatgaagaccatggtaaatgggacaagttcaagtttttgttgc 374  Q
     ||||||||||||||  | |||||||| |||| ||||||| | |  |||||| | ||||| |||| ||||||||    
8715 taggtatttacttgttcttgatgatgtgtggactgaagacaaagagaaatggaataagttaaagtctttgttgc 8642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 333
Target Start/End: Complemental strand, 27001 - 26946
Alignment:
278 gttcaagaagttttgcaaagcaaaaggtatttacttgtattagatgatgtttggaa 333  Q
    ||||||||||||||||||||||||| ||||||||||||| | |||| ||| |||||    
27001 gttcaagaagttttgcaaagcaaaaagtatttacttgtactggatgctgtgtggaa 26946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 37992 - 37773
Alignment:
1 agacaaagataaagagaagattgtcgagtttcttctgaggcatgctagtgacagtgaagaactctctatctatcccattgttggccacagtggatatgga 100  Q
    |||||||||||||||  ||||||| ||||||||||| |   |||| || || ||||||||||||| | ||| | ||||||||||     | ||| | |||    
37992 agacaaagataaagaacagattgtagagtttcttctaa---atgccagcgaaagtgaagaactctttgtctgttccattgttggtgttggcggacaagga 37896  T
101 aaaacaacacttgctcaattggtctataacgatgaaagtgtaagcacccattttgacttgaaaatatgggtttgtgtttcagatgatttcagcatgatta 200  Q
    ||||||||||| |||||| ||||||| || |||||||| ||||  || ||||||||||||||||||||||| |||||||| |||||||||||  |||| |    
37895 aaaacaacactcgctcaaatggtctacaatgatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatga 37796  T
201 aaatcctacactccatcatagaa 223  Q
    ||||  || | ||||||||||||    
37795 aaattttagagtccatcatagaa 37773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 375
Target Start/End: Complemental strand, 37719 - 37621
Alignment:
277 ggttcaagaagttttgcaaagcaaaaggtatttacttgtattagatgatgtttggaatgaagaccatggtaaatgggacaagttcaagtttttgttgca 375  Q
    |||||||||  ||||||||| |||||||||||| |||||  | ||||||||||||| ||||||||| |  |||||| | ||||| |||| |||||||||    
37719 ggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttggagtgaagaccaagagaaatggaataagttaaagtctttgttgca 37621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 9815 - 9679
Alignment:
53 agtgaagaactctctatctatcccattgttggccacagtggatatggaaaaacaacacttgctcaattggtctataacgatgaaagtgtaagcacccatt 152  Q
    ||||||||||||||  ||||| ||||||||||     ||||  | ||||||||||||||||||||| |||| |  || |||||||| |||   || || |    
9815 agtgaagaactctcngtctattccattgttggtgttggtgggcaaggaaaaacaacacttgctcaagtggtgttcaatgatgaaagggtagatacacact 9716  T
153 ttgacttgaaaatatgggtttgtgtttcagatgattt 189  Q
    || |||||||||||||||| |||||||| || |||||    
9715 ttaacttgaaaatatgggtgtgtgtttctgaggattt 9679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 135
Target Start/End: Complemental strand, 17983943 - 17983905
Alignment:
97 tggaaaaacaacacttgctcaattggtctataacgatga 135  Q
    |||||||||||| ||||||||||||||||| ||||||||    
17983943 tggaaaaacaactcttgctcaattggtctacaacgatga 17983905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 36
Target Start/End: Original strand, 30520597 - 30520625
Alignment:
8 gataaagagaagattgtcgagtttcttct 36  Q
    |||||||||||||||||||||||||||||    
30520597 gataaagagaagattgtcgagtttcttct 30520625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 36
Target Start/End: Original strand, 30560937 - 30560965
Alignment:
8 gataaagagaagattgtcgagtttcttct 36  Q
    |||||||||||||||||||||||||||||    
30560937 gataaagagaagattgtcgagtttcttct 30560965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 135
Target Start/End: Original strand, 7580780 - 7580818
Alignment:
97 tggaaaaacaacacttgctcaattggtctataacgatga 135  Q
    |||||||||||| ||||||||||||||||| ||||||||    
7580780 tggaaaaacaactcttgctcaattggtctacaacgatga 7580818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 7129005 - 7128965
Alignment:
149 cattttgacttgaaaatatgggtttgtgtttcagatgattt 189  Q
    |||||||| ||||||| ||||||||||||||| ||||||||    
7129005 cattttgagttgaaaaaatgggtttgtgtttctgatgattt 7128965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 7713991 - 7713951
Alignment:
149 cattttgacttgaaaatatgggtttgtgtttcagatgattt 189  Q
    |||||||| ||||||| ||||||||||||||| ||||||||    
7713991 cattttgagttgaaaaaatgggtttgtgtttctgatgattt 7713951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 7722279 - 7722239
Alignment:
149 cattttgacttgaaaatatgggtttgtgtttcagatgattt 189  Q
    |||||||| ||||||| ||||||||||||||| ||||||||    
7722279 cattttgagttgaaaaaatgggtttgtgtttctgatgattt 7722239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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