View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19971_high_3 (Length: 622)
Name: NF19971_high_3
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19971_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 19934499 - 19934856
Alignment:
| Q |
1 |
cacttcgaagacgaaacctttcaaaacatggaatcctttagccattttatgtcctctgtttttctcttacgagatattactttacccattagatcgttcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19934499 |
cacttcgaagacgaaacctttcaaaacatggaatcctttagccattttatgtcctctgtttttctcttacgagatattactttacccattagatcgttcc |
19934598 |
T |
|
| Q |
101 |
acctcaaccgttcaaaacgttatggcattgagacacaggatatcaatcgatttgttcacgctattgcacaacgtggaatcgagaacctcaatcttgaact |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19934599 |
acctcaaccgttcaaaacgttatggcattgagacacagaatatcaatcgatttgttcacgctattgcacaacgtggaatcgagaacctcaatcttgaact |
19934698 |
T |
|
| Q |
201 |
gtccggcagtataacattacctcgtagcgttttcagctgtaggaccctcgttgttcttcatttgcaatggattacagtgaaagacctttctcaactggtt |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19934699 |
gtccggcagtataacattacctcgtagcgttttcagctgtaggaccctcgttgttcttcatttgcaatggattacagtgaaagacctttctcaactggtt |
19934798 |
T |
|
| Q |
301 |
gtggattttcctctcctcaaagaacttcacttttttggtgtacttttggaacgtgctgaa |
360 |
Q |
| |
|
||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||| |
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| T |
19934799 |
gtggattttcctctcct--aaaaacttcacttgtttggtgtacttttggaacgtgctgaa |
19934856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 19965638 - 19965995
Alignment:
| Q |
1 |
cacttcgaagacgaaacctttcaaaacatggaatcctttagccattttatgtcctctgtttttctcttacgagatattactttacccattagatcgttcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19965638 |
cacttcgaagacgaaacctttcaaaacatggaatcctttagccattttatgtcctctgtttttctcttacgagatattactttacccattagatcgttcc |
19965737 |
T |
|
| Q |
101 |
acctcaaccgttcaaaacgttatggcattgagacacaggatatcaatcgatttgttcacgctattgcacaacgtggaatcgagaacctcaatcttgaact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19965738 |
acctcaaccgttcaaaacgttatggcattgagacacagaatatcaatcgatttgttcacgctattgcacaacgtggaatcgagaacctcaatcttgaact |
19965837 |
T |
|
| Q |
201 |
gtccggcagtataacattacctcgtagcgttttcagctgtaggaccctcgttgttcttcatttgcaatggattacagtgaaagacctttctcaactggtt |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19965838 |
gtccggcagtataacattacctcgtagcgttttcagctgtaggaccctcgttgttcttcatttgcaatggattacagtgaaagacctttctcaactggtt |
19965937 |
T |
|
| Q |
301 |
gtggattttcctctcctcaaagaacttcacttttttggtgtacttttggaacgtgctgaa |
360 |
Q |
| |
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||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||| |
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|
| T |
19965938 |
gtggattttcctctcct--aaaaacttcacttgtttggtgtacttttggaacgtgctgaa |
19965995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 354 - 607
Target Start/End: Original strand, 19934904 - 19935156
Alignment:
| Q |
354 |
tgctgaacgtttaattgtcagaaacaaggaatggcttgtttcactgaattttgtacgacaaaagtttccaagcttaccgaagttaatcacagcaaacatt |
453 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19934904 |
tgctgaaagtttaattgtcagaaacaaggaatggcttgtttcactgaattttgtacgacaaaagtttccaagcttaccgaagttaatcacagcaaacatt |
19935003 |
T |
|
| Q |
454 |
actaaatcgtcccattctttggcgctttttctcacattactttgcagggcaaagtctcagcttctgcgtgcagaattggtaagaatattatagttgattt |
553 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||| |
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| T |
19935004 |
actaaatcgtcccattctttggcgctttttctcgcattactttgcagggcaaagtctcaacttctgcgtgcagaattggtaagaatattatggttaattt |
19935103 |
T |
|
| Q |
554 |
annnnnnnaataaactttgttaattatagttttgcccttcgattatgatctgtg |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19935104 |
-tttttttaataaactttgttaattatagttttgcccttcgattatgatctgtg |
19935156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 354 - 607
Target Start/End: Original strand, 19966043 - 19966295
Alignment:
| Q |
354 |
tgctgaacgtttaattgtcagaaacaaggaatggcttgtttcactgaattttgtacgacaaaagtttccaagcttaccgaagttaatcacagcaaacatt |
453 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19966043 |
tgctgaaagtttaattgtcagaaacaaggaatggcttgtttcactgaattttgtacgacaaaagtttccaagcttaccgaagttaatcacagcaaacatt |
19966142 |
T |
|
| Q |
454 |
actaaatcgtcccattctttggcgctttttctcacattactttgcagggcaaagtctcagcttctgcgtgcagaattggtaagaatattatagttgattt |
553 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||| |
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| T |
19966143 |
actaaatcgtcccattctttggcgctttttctcgcattactttgcagggcaaagtctcaacttctgcgtgcagaattggtaagaatattatggttaattt |
19966242 |
T |
|
| Q |
554 |
annnnnnnaataaactttgttaattatagttttgcccttcgattatgatctgtg |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19966243 |
-tttttttaataaactttgttaattatagttttgcccttcgattatgatctgtg |
19966295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 19926585 - 19926745
Alignment:
| Q |
1 |
cacttcgaagacgaaacctttcaaaacatggaatcctttagccattttatgtcctctgtttttctcttacgagatattactttacccattagatcgttcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| | |||| |||| |
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| T |
19926585 |
cacttcgaagacgaaacctttcaaaacatggaatcctttagccattttatgtcctctgtctttcttttacgagacattactttacccctccgatcattcc |
19926684 |
T |
|
| Q |
101 |
acctcaaccgttcaaaacgttatggcattgagacacaggatatcaatcgatttgttcacgc |
161 |
Q |
| |
|
||||||| |||||||| | |||||| || |||| ||||||||||||||||||||||| |
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| T |
19926685 |
acctcaaatgttcaaaagcctctggcatccagccacaagatatcaatcgatttgttcacgc |
19926745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 154 - 321
Target Start/End: Original strand, 19928420 - 19928587
Alignment:
| Q |
154 |
gttcacgctattgcacaacgtggaatcgagaacctcaatcttgaactgtccggcagtataacattacctcgtagcgttttcagctgtaggaccctcgttg |
253 |
Q |
| |
|
||||||||| || |||||||||||||||| |||||||||||||| || | ||||| ||||||||||||||||| ||||||| ||||||||||| ||| |
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| T |
19928420 |
gttcacgctgctgtacaacgtggaatcgaggacctcaatcttgaaatgcctggcagggtaacattacctcgtagcattttcagttgtaggacccttgttt |
19928519 |
T |
|
| Q |
254 |
ttcttcatttgcaatggattacagtgaaagacctttctcaactggttgtggattttcctctcctcaaa |
321 |
Q |
| |
|
|||||||||| || || ||| |||||| ||| ||||||| |||||| ||||| ||||| |||||| |
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|
| T |
19928520 |
ctcttcatttgaaagggcttaaagtgaatgacatttctcacggggttgtagatttccctctgctcaaa |
19928587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 293
Target Start/End: Complemental strand, 47606346 - 47606269
Alignment:
| Q |
216 |
attacctcgtagcgttttcagctgtaggaccctcgttgttcttcatttgcaatggattacagtgaaagacctttctca |
293 |
Q |
| |
|
||||||||||||| |||| || ||||| ||||| |||||||||||||| || || | | |||||| ||||||||||| |
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|
| T |
47606346 |
attacctcgtagcatttttagttgtagaacccttattgttcttcatttgaaagggctaaaagtgaatgacctttctca |
47606269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 321
Target Start/End: Complemental strand, 4288847 - 4288802
Alignment:
| Q |
276 |
agtgaaagacctttctcaactggttgtggattttcctctcctcaaa |
321 |
Q |
| |
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|||||| || ||||||||| |||||||| ||||||||||||||||| |
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|
| T |
4288847 |
agtgaatgatctttctcaagtggttgtgaattttcctctcctcaaa |
4288802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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