View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19971_high_34 (Length: 330)
Name: NF19971_high_34
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19971_high_34 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-172; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 11 - 315
Target Start/End: Complemental strand, 25885518 - 25885214
Alignment:
| Q |
11 |
agaaaatcggtatgcttattcgttcgagcataattacttcggtttacaaaaagggtctgaggttgtcaagttcttcaagacaagctcatggaacaggaca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25885518 |
agaaaatcggtatgcttattcgttcgagcataattacttcggtttacaaaaagggtctgaggttgtcaagttcttcaagacaagctcatggaacaggaca |
25885419 |
T |
|
| Q |
111 |
gatagtgaatcacatggctgttgatgctcaacaactctcagatatgatgatgcagcttcaccctatatggttgatgccattgcaagtagctgtggcattg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25885418 |
gatagtgaatcacatggctgttgatgctcaacaactctcagatatgatgatgcagcttcaccctatatggttgatgccattgcaagtagctgtggcattg |
25885319 |
T |
|
| Q |
211 |
gctcttatgtatagctatgttggtgtatcagtacttgcagcattgcttggaactagcatagtgtttcttttcgcgctatatcgaaccaagagtagtaaca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25885318 |
gctcttatgtatagctatgttggtgtatcagtacttgcagcattgcttggaactagcatagtgtttcttttcgcgctatatcgaaccaagagtagtaaca |
25885219 |
T |
|
| Q |
311 |
acttt |
315 |
Q |
| |
|
||||| |
|
|
| T |
25885218 |
acttt |
25885214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 11 - 211
Target Start/End: Complemental strand, 44349363 - 44349163
Alignment:
| Q |
11 |
agaaaatcggtatgcttattcgttcgagcataattacttcggtttacaaaaagggtctgaggttgtcaagttcttcaagacaagctcatggaacaggaca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44349363 |
agaaaatcggtatgcttattcgttcgagcataatcactttggtttacaaaaagggtctaagattgtcaagttcttcaagacaagctcatggaacaggaca |
44349264 |
T |
|
| Q |
111 |
gatagtgaatcacatggctgttgatgctcaacaactctcagatatgatgatgcagcttcaccctatatggttgatgccattgcaagtagctgtggcattg |
210 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44349263 |
gatagtgaatcacatgtctgttgatgctcaacaactctcagatatgatgatgcagcttcaccctatatggttgatgccattgcaagtagctgtggcattg |
44349164 |
T |
|
| Q |
211 |
g |
211 |
Q |
| |
|
| |
|
|
| T |
44349163 |
g |
44349163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 308
Target Start/End: Complemental strand, 14320830 - 14320539
Alignment:
| Q |
17 |
tcggtatgcttattcgttcgagcataattacttcggtttacaaaaagggtctgaggttgtcaagttcttcaagacaagctcatggaacaggacagatagt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||| || || || || |
|
|
| T |
14320830 |
tcggtatgcttattcgttcgagcataatcacttcagtttacaaaaagggtttaaggttgtcaagttcttcaagacaagctcatggaactggccaaattgt |
14320731 |
T |
|
| Q |
117 |
gaatcacatggctgttgatgctcaacaactctcagatatgatgatgcagcttcaccctatatggttgatgccattgcaagtagctgtggcattggctctt |
216 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||| |||| |||||||||||||||||||||||||| | || |||||||||||| |
|
|
| T |
14320730 |
taatcacatggctgttgatgctcaacagctctcagatttgatgatgcagtttcatcctatatggttgatgccattgcaagttggtgctgcattggctctt |
14320631 |
T |
|
| Q |
217 |
atgtatagctatgttggtgtatcagtacttgcagcattgcttggaactagcatagtgtttcttttcgcgctatatcgaaccaagagtagtaa |
308 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||| || |||||||||||||||||||||| ||| | || |||||||| ||||||||||| |
|
|
| T |
14320630 |
atgtacagctatgttggtctatcagtacttgcagcagtgtttggaactagcatagtgtttctcttcacactctatcgaacgaagagtagtaa |
14320539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 14304437 - 14304204
Alignment:
| Q |
19 |
ggtatgcttattcgttcgagcataattacttcggtttacaaaaagggtctgaggttgtcaagttcttcaagacaagctcatggaacaggacagatagtga |
118 |
Q |
| |
|
||||||||| |||| ||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||| |||||||| |||| |
|
|
| T |
14304437 |
ggtatgcttgttcgctcgagcataatcacttcggtttacaaaaagggtttaaggttgtcaagttcttcaagacaggctcatggaactggacagattgtga |
14304338 |
T |
|
| Q |
119 |
atcacatggctgttgatgctcaacaactctcagatatgatgatgcagcttcaccctatatggttgatgccattgcaagtagctgtggcattggctcttat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||| |||| ||||| ||| |||||||||| ||||| || | |||||||||||||| |
|
|
| T |
14304337 |
atcacatggctgttgatgctcaacaactctcagacttgatgaagcagtttcatcctatttggatgatgccattacaagttgccgctgcattggctcttat |
14304238 |
T |
|
| Q |
219 |
gtatagctatgttggtgtatcagtacttgcagca |
252 |
Q |
| |
|
||||||||||||||||||||| || |||||||| |
|
|
| T |
14304237 |
gtatagctatgttggtgtatctgtcgttgcagca |
14304204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 14282679 - 14282465
Alignment:
| Q |
19 |
ggtatgcttattcgttcgagcataattacttcggtttacaaaaagggtctgaggttgtcaagttcttcaagacaagctcatggaacaggacagatagtga |
118 |
Q |
| |
|
||||||||| |||||||||||||||| ||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
14282679 |
ggtatgcttgttcgttcgagcataatcacttcagtttacaaaaagggcttaaggttgtcaagttcttcaagacaagctcatggaactggacagattgtga |
14282580 |
T |
|
| Q |
119 |
atcacatggctgttgatgctcaacaactctcagatatgatgatgcagcttcaccctatatggttgatgccattgcaagtagctgtggcattggctcttat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| | | |||||| |||| | |
|
|
| T |
14282579 |
atcacatggctgttgatgctcaacaactctcagatttgatgatgcagtttcatcctatatggttgatgccattgcaagtttccgctgcattgtttctttt |
14282480 |
T |
|
| Q |
219 |
gtatagctatgttgg |
233 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
14282479 |
gtatagctatgttgg |
14282465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University