View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19971_high_36 (Length: 311)
Name: NF19971_high_36
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19971_high_36 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 26 - 311
Target Start/End: Complemental strand, 34765696 - 34765411
Alignment:
| Q |
26 |
tgccacaagatgagtaagcttctgcttcttgaaaattaatcgttgagaagttgccaccgtgttgctaaatgtgagtctttgctaaagtaaaccagacgag |
125 |
Q |
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| T |
34765696 |
tgccacaagatgagtaagcttctgcttcttgaaaattaatcgatgcgaagttgccaccgtgttgctaaatgtgagtctttgctaaagttaaccagacgag |
34765597 |
T |
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| Q |
126 |
attgctaatattacagttcttgaggttttagatgtgcataataaccaccttggtggcgaaattccatcgttatttgagcaagcttattctcaacaataat |
225 |
Q |
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| T |
34765596 |
attgctaatattacagttcttgaggttttagatgtgcataataaccaccttggtggcgaaattccgtcgttatttgagcaagcttattctcaacaataat |
34765497 |
T |
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| Q |
226 |
attattaataggttcaatttgaaaatctgtaccaaattttcagaagctaacttttttggatttgagctataacagcttatccagtt |
311 |
Q |
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| T |
34765496 |
attattaataggttcaatttgaaaatctgtaccaaattttcagaagctaacttttttggatttgagctataacagcttatccagtt |
34765411 |
T |
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Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 196 - 306
Target Start/End: Complemental strand, 44015477 - 44015368
Alignment:
| Q |
196 |
tatttgagcaagcttattctcaacaataatattattaataggttcaatttgaaaatctgtaccaaattttcagaagctaacttttttggatttgagctat |
295 |
Q |
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| T |
44015477 |
tatttgaacaagcttattctcaacaataat-ttattaacaggctcaataccaaaatctgttagaaatctacagaagctaactcttttggatttgagttat |
44015379 |
T |
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| Q |
296 |
aacagcttatc |
306 |
Q |
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| T |
44015378 |
aatagcttatc |
44015368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 6401705 - 6401771
Alignment:
| Q |
122 |
cgagattgctaatattacagttcttgaggttttagatgtgcataataaccaccttggtggcgaaatt |
188 |
Q |
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| T |
6401705 |
cgagattgctaatattacagttcttgagcttatagatgtgcataataattacctcggtggtgaaatt |
6401771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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