View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19971_high_40 (Length: 297)

Name: NF19971_high_40
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19971_high_40
NF19971_high_40
[»] chr8 (1 HSPs)
chr8 (10-297)||(44891378-44891669)


Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 297
Target Start/End: Complemental strand, 44891669 - 44891378
Alignment:
Q  10 ataattctaacagacacaaca---gtggcactcaatgaatggtgaacagaataaagggctaagatttaagaattacttcatattactttatattaagaaa 106  Q
    |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44891669 ataattctaacagacacaacaacagtggcactcaatgaatggtgaacagaataaagggctaagatttaagaattacttcacattactttatattaagaaa 44891570  T
Q  107 tgatattttttaaattcaatgtgtcaaattaccacatatttcacaagtaaag-aaatatgtggtctagaagaattgcaattcatgcctcaagtcnnnnnn 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||          
T  44891569 tgatattttttaaattcaatgtgtcaaattaccacatatttcacaagtaaagaaaatatgtggtctagaagaattgcaattcatgcctcaagtcaaaaaa 44891470  T
Q  206 nnccttcgctttttccagtgtcattaaacacaacaaacttgcggcaaaatttgtggctggcctcaaagttgtatgattccaattttgatatt 297  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44891469 atccttcgctttttccagtgtcattaaacacaacaaacttgcggcaaaatttgtggctggcctcaaagttgtatgattccaattttgatatt 44891378  T

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