View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19971_high_42 (Length: 293)
Name: NF19971_high_42
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19971_high_42 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 9e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 122 - 272
Target Start/End: Complemental strand, 14357204 - 14357053
Alignment:
| Q |
122 |
cccatatgatctaaagagtattcaaaaataataaaaatgataactttatggtattttttattggattattataaactaacgatgaccttttaatttatat |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14357204 |
cccatatgatctaaagagtattcaaaaataataaaaatgataactttatggtattttttattggattattataaactaacgatgaccttttaatttatat |
14357105 |
T |
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| Q |
222 |
acataaaa-attgcaactttataatcaattcctagcttatagaacatgaatt |
272 |
Q |
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| T |
14357104 |
acataaaagattgcaactttataatcaattcctagcttatagaacatgaatt |
14357053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 14357288 - 14357254
Alignment:
| Q |
18 |
cacacactacccaactttttcttcttcgccaaatc |
52 |
Q |
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| T |
14357288 |
cacacactacccaactttttcttcttcaccaaatc |
14357254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 122 - 272
Target Start/End: Original strand, 29657812 - 29657962
Alignment:
| Q |
122 |
cccatatgatctaaagagtattcaaaaataataaaaatgataactttatggtattttttattggattattataaactaacgatgaccttttaatttatat |
221 |
Q |
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||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
29657812 |
cccatatgatctaaaaagtattcaaaaataataaaaattataactttatggta-tttttattggattattataaactaacgatggccctttaatttatat |
29657910 |
T |
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| Q |
222 |
acataaaa-attgcaactttataatcaattcctagcttatagaacatgaatt |
272 |
Q |
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| T |
29657911 |
acataaaagattgcaactttataatcaattcctagcttatagaacatgaatt |
29657962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 127 - 219
Target Start/End: Original strand, 5547522 - 5547612
Alignment:
| Q |
127 |
atgatctaaagagtattcaaaaataataaaaatgataactttatggtattttttattggattattataaactaacgatgaccttttaatttat |
219 |
Q |
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|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||| |||||||||| |
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| T |
5547522 |
atgatctaaaaagtattcaaatataataaaaatgataactttatggtattttttattggataattat-aactaac-atgaccctttaatttat |
5547612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 155 - 248
Target Start/End: Complemental strand, 21730942 - 21730848
Alignment:
| Q |
155 |
aaaatgataactttatggtattttttattggattattataaactaacgatgaccttttaatttatatacataaaa-attgcaactttataatcaa |
248 |
Q |
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| T |
21730942 |
aaaatggtaactttatgctattttttattggattattaaaaactagcgatgaccctttaatttatatacataaaagattataactttataatcaa |
21730848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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