View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19971_high_5 (Length: 583)
Name: NF19971_high_5
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19971_high_5 |
 | |
|
| [»] scaffold0061 (2 HSPs) |
| | |
|
| [»] scaffold0017 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 519; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 18 - 568
Target Start/End: Original strand, 751725 - 752275
Alignment:
| Q |
18 |
atgatgaacctgaaacatggcctaaagacacaaaagatgtgcaaagaattcttcaaaggtactataacacaacaattgataggcgtcttaagacctataa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
751725 |
atgatgaacctgaaacatggcctaaagacacaaaagagttgcaaagaattcttcaaaggtactataacacaacaattgataggcgtcttaagacctataa |
751824 |
T |
|
| Q |
118 |
tgttcaagaatattttaaagaaaggatgaaaaaagttgaatttgagatttccaaagtgcgcaaagagaagtttaagatgaagtatcaaacttgggatgaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
751825 |
tgttcaagaatattttaaagaaaggatgaaaaaagttgaatttgagatttccaaagtgcgcaaagagaagtttaagatgaagtatcaaacttgggatgaa |
751924 |
T |
|
| Q |
218 |
tcattcaattttcttgcagatgaacaattaaggttatttgctaggatcttggattttaagcttgatgcatgcaatctaaagatgaatatgctaaaaggag |
317 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
751925 |
tcattcaattttcttgaagatgaacaattaaggttatttgctagcatcttggattttaagcttgatgcatgcaatctaaagatgaatatgctaaagggag |
752024 |
T |
|
| Q |
318 |
atcttaggggaaaatcaatagctcttgaaacaaacaagattgataaccttaatagttctccttacttggactcaaatccaagtagctacttcaatctcgt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
752025 |
atcttaggggaaaatcaatagctcttgaaacaaacaagattgataaccttaatagttctccttacttggactcaaatccaagtagctacttcaatctccc |
752124 |
T |
|
| Q |
418 |
gcaaaacaacatgtctcaagcacacatttatcctccattgatgaatatcaatgataaaaaccctttagggttttggccacttatatcaggacaaagctct |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
752125 |
gcaaaacaacatgtctcaagcacacatttatccaccattgatgaatatcaatgataaaaaccctttagggttttggccacttatatcaggacaaagctct |
752224 |
T |
|
| Q |
518 |
caaccctctcatatggtttcaactgcacaaagctctcaaccttctcctatg |
568 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
752225 |
caaccctctcatatggtttcaactgcacaaagctctcaaccttctcctatg |
752275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 22 - 552
Target Start/End: Complemental strand, 7327704 - 7327174
Alignment:
| Q |
22 |
tgaacctgaaacatggcctaaagacacaaaagatgtgcaaagaattcttcaaaggtactataacacaacaattgataggcgtcttaagacctataatgtt |
121 |
Q |
| |
|
|||||||||||||||||||||||||| || ||| ||||||||||| ||||||| ||||||||| ||||||| ||| ||||||| ||||| |||| ||||| |
|
|
| T |
7327704 |
tgaacctgaaacatggcctaaagacaaaagagaggtgcaaagaatccttcaaaagtactataatacaacaagtgacaggcgtcctaagatctatgatgtt |
7327605 |
T |
|
| Q |
122 |
caagaatattttaaagaaaggatgaaaaaagttgaatttgagatttccaaagtgcgcaaagagaagtttaagatgaagtatcaaacttgggatgaatcat |
221 |
Q |
| |
|
||||| |||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||| | ||||||| ||||| | | ||||||||||| | |
|
|
| T |
7327604 |
caagagtattttaaggaaaggatgaaaaaaattaaatttgagatttccaaagtgcgcaaagagaagataaagatgatgtatccatcctgggatgaatctt |
7327505 |
T |
|
| Q |
222 |
tcaattttcttgcagatgaacaattaaggttatttgctaggatcttggattttaagcttgatgcatgcaatctaaagatgaatatgctaaaaggagatct |
321 |
Q |
| |
|
||||| |||| || |||||| | |||| ||||||||| || ||||||| ||||||||||| || |||| || |||| ||||||||||||||||||| |
|
|
| T |
7327504 |
acaattcacttggagtggaacaagtgaggtcatttgctagcatgttggattccaagcttgatgcttgtaatcaaaggatgcatatgctaaaaggagatct |
7327405 |
T |
|
| Q |
322 |
taggggaaaatcaatagctcttgaaacaaacaagattgataaccttaatagttctccttacttggactcaaatccaagtagctacttcaatctcgtgcaa |
421 |
Q |
| |
|
|| |||||| ||||||||| |||| || ||||| |||||| |||| || ||| |||| | |||||| ||||||||||||||||||||| ||||| |
|
|
| T |
7327404 |
taaaggaaaaacaatagctcatgaatcacacaaggttgatatacttataggtaaccctaacttagcctcaaagccaagtagctacttcaatctcatgcaa |
7327305 |
T |
|
| Q |
422 |
aacaacatgtctcaagcacacatttatcctccattgatgaatatcaatgataaaaaccctttagggttttggccacttatatcaggacaaagctctcaac |
521 |
Q |
| |
|
|||||||||| | ||||| | ||| ||||||||||||||||||| |||||||||| ||| ||||||||||||| |||| | |||||||||||||||| |
|
|
| T |
7327304 |
aacaacatgtttgaagcaaaaattcatcctccattgatgaatattaatgataaaaccccattagggttttggcaacttcaactcggacaaagctctcaac |
7327205 |
T |
|
| Q |
522 |
cctctcatatggtttcaactgcacaaagctc |
552 |
Q |
| |
|
| ||| |||| |||| | ||| |||||||| |
|
|
| T |
7327204 |
cttcttctatgatttccaatgcgcaaagctc |
7327174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 22 - 314
Target Start/End: Original strand, 745826 - 746118
Alignment:
| Q |
22 |
tgaacctgaaacatggcctaaagacacaaaagatgtgcaaagaattcttcaaaggtactataacacaacaattgataggcgtcttaagacctataatgtt |
121 |
Q |
| |
|
|||||||||||||||||||||||||| || ||| || |||||| ||||||||| ||||||| | ||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
745826 |
tgaacctgaaacatggcctaaagacaaaagagaggtacaaagagttcttcaaaagtactatgagacaacaattgataggcgtcctaagacctatgatgtt |
745925 |
T |
|
| Q |
122 |
caagaatattttaaagaaaggatgaaaaaagttgaatttgagatttccaaagtgcgcaaagagaagtttaagatgaagtatcaaacttgggatgaatcat |
221 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||| ||||||| ||| ||||||||||||| ||||||||||||||| | |
|
|
| T |
745926 |
caagaatattttaaggaaaggatgaaaaaagttgaattggagatttacaaagtgcgtaaagagaggttaaagatgaagtatccaacttgggatgaatctt |
746025 |
T |
|
| Q |
222 |
tcaattttcttgcagatgaacaattaaggttatttgctaggatcttggattttaagcttgatgcatgcaatctaaagatgaatatgctaaaag |
314 |
Q |
| |
|
||||| | ||| | |||||||||| |||| ||||| |||| | ||||||| ||||||||| ||||| ||| |||||||||||||| ||||| |
|
|
| T |
746026 |
acaattcttttggaaatgaacaattgaggtcatttgttaggtttttggattctaagcttgacgcatgtgatcaaaagatgaatatgcgaaaag |
746118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 360 - 552
Target Start/End: Original strand, 746137 - 746329
Alignment:
| Q |
360 |
ataaccttaatagttctccttacttggactcaaatccaagtagctacttcaatctcgtgcaaaacaacatgtctcaagcacacatttatcctccattgat |
459 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||| || ||| | ||||||||||| |||| | |||||| ||||||| | ||||| |||||||||| |
|
|
| T |
746137 |
ataaccttattagttctccttacttgacctcaaattcaggtaccaacttcaatctcatgcataccaacatatctcaagttaaaatttactctccattgat |
746236 |
T |
|
| Q |
460 |
gaatatcaatgataaaaaccctttagggttttggccacttatatcaggacaaagctctcaaccctctcatatggtttcaactgcacaaagctc |
552 |
Q |
| |
|
|||||| ||||||||| || ||||||||||||||| || || |||||||||||||||| |||| ||||||||| | |||||||||||| |
|
|
| T |
746237 |
gaatatttgtgataaaaatcccttagggttttggccaattcgattgggacaaagctctcaacattctcttatggtttccagtgcacaaagctc |
746329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 22 - 522
Target Start/End: Complemental strand, 51792794 - 51792294
Alignment:
| Q |
22 |
tgaacctgaaacatggcctaaagacacaaaagatgtgcaaagaattcttcaaaggtactataacacaacaattgataggcgtcttaagacctataatgtt |
121 |
Q |
| |
|
||||||||||||||||||||| |||| || || || ||||||| ||||||| ||||||||||||||||| ||||||||||| ||||| |||| ||||| |
|
|
| T |
51792794 |
tgaacctgaaacatggcctaaggacaaaagagcggtagaaagaatccttcaaaagtactataacacaacaagtgataggcgtcctaagatctatgatgtt |
51792695 |
T |
|
| Q |
122 |
caagaatattttaaagaaaggatgaaaaaagttgaatttgagatttccaaagtgcgcaaagagaagtttaagatgaagtatcaaacttgggatgaatcat |
221 |
Q |
| |
|
||||| |||||||| ||||| || | |||| ||||||| |||||| |||||||||| ||||||||||| ||||||| ||||| ||||||| ||||||| | |
|
|
| T |
51792694 |
caagagtattttaaggaaagaattagaaaacttgaattcgagattaccaaagtgcgtaaagagaagttaaagatgatgtatccaacttggaatgaatctt |
51792595 |
T |
|
| Q |
222 |
tcaattttcttgcagatgaacaattaaggttatttgctaggatcttggattttaagcttgatgcatgcaatctaaagatgaatatgctaaaaggagatct |
321 |
Q |
| |
|
|||||| ||||| || |||||||| | |||||||| || | |||| |||||||||||| || |||| ||||| | |||||||||||| |||||| |
|
|
| T |
51792594 |
tcaattctcttggagcggaacaattgatattatttgcaagcaaactggaagctaagcttgatgcttgtaatcaaaagaagcatatgctaaaagaagatct |
51792495 |
T |
|
| Q |
322 |
taggggaaaatcaatagctcttgaaacaaacaagattgataaccttaatagttctccttacttggactcaaatccaagtagctacttcaatctcgtgcaa |
421 |
Q |
| |
|
|| ||||||| ||||||||| |||| || ||||| | ||||| |||| ||| |||||| |||| | ||||||||||| ||||||||||||| ||||| |
|
|
| T |
51792494 |
taagggaaaaacaatagctcatgaatcacacaaggtagataaacttatcagtactccttccttgaccccaaatccaagttactacttcaatctcatgcaa |
51792395 |
T |
|
| Q |
422 |
aacaacatgtctcaagcacacatttatcctccattgatgaatatcaatgataaaaaccctttagggttttggccacttatatcaggacaaagctctcaac |
521 |
Q |
| |
|
|| ||||||||||||||| | |||||||||| |||||||||| | |||||||||||| |||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
51792394 |
aattccatgtctcaagcacaaacttatcctccaatgatgaatattagtgataaaaaccccttagggttttggccacttcaatcgggacaaagctctcaac |
51792295 |
T |
|
| Q |
522 |
c |
522 |
Q |
| |
|
| |
|
|
| T |
51792294 |
c |
51792294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 115 - 465
Target Start/End: Complemental strand, 2611 - 2262
Alignment:
| Q |
115 |
taatgttcaagaatattttaaagaaaggatgaaaaaagttgaatttgagatttccaaagtgcgcaaagagaagtttaagatgaagtatcaaacttgggat |
214 |
Q |
| |
|
|||||||||||| || ||||| |||| |||| |||||||||||||| ||||||||| ||||| ||||||| ||| ||||| | |||| || |||| || |
|
|
| T |
2611 |
taatgttcaagagtaatttaaggaaaagatggaaaaagttgaatttaagatttccagagtgcagaaagagatgttgaagatcagttatccaagttggaat |
2512 |
T |
|
| Q |
215 |
--gaatcattcaattttcttgcagatgaacaattaaggttatttgctaggatcttggattttaagcttgatgcatgcaatctaaagatgaatatgctaaa |
312 |
Q |
| |
|
||||| | |||| | || | |||||||| | ||| ||||| || | || ||| |||||||||||| || | || |||||| ||||||||||| |
|
|
| T |
2511 |
atgaatcttgtaattcttttaggcaggaacaattgaagttttttgccagcttattagatgataagcttgatgcttgtattcaaaagataaatatgctaaa |
2412 |
T |
|
| Q |
313 |
aggagatcttaggggaaaatcaatagctcttgaaacaaacaagattgataaccttaatagttctccttacttggactcaaatccaagtagctacttcaat |
412 |
Q |
| |
|
|||| ||| || ||||||| ||||||||| |||| || ||||| ||||||| |||| |||| |||| |||||| |||||||||||||| | ||||||| |
|
|
| T |
2411 |
aggatatcataagggaaaagcaatagctcatgaatcacacaaggttgataaacttattagtattcctcacttggcctcaaatccaagtaattgcttcaat |
2312 |
T |
|
| Q |
413 |
ctcgtgcaaaacaacatgtctcaagcacacatttatcctccattgatgaatat |
465 |
Q |
| |
|
|| ||||| ||||||||||||||| | ||||| ||||||||||| ||||| |
|
|
| T |
2311 |
ttcatgcaa---aacatgtctcaagcagaaatttaacctccattgattaatat |
2262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 115 - 465
Target Start/End: Complemental strand, 8122 - 7773
Alignment:
| Q |
115 |
taatgttcaagaatattttaaagaaaggatgaaaaaagttgaatttgagatttccaaagtgcgcaaagagaagtttaagatgaagtatcaaacttgggat |
214 |
Q |
| |
|
|||||||||||| || ||||| |||| |||| |||||||||||||| ||||||||| ||||| ||||||| ||| ||||| | |||| || |||| || |
|
|
| T |
8122 |
taatgttcaagagtaatttaaggaaaagatggaaaaagttgaatttaagatttccagagtgcagaaagagatgttgaagatcagttatccaagttggaat |
8023 |
T |
|
| Q |
215 |
--gaatcattcaattttcttgcagatgaacaattaaggttatttgctaggatcttggattttaagcttgatgcatgcaatctaaagatgaatatgctaaa |
312 |
Q |
| |
|
||||| | |||| | || | |||||||| | ||| ||||| || | || ||| |||||||||||| || | || |||||| ||||||||||| |
|
|
| T |
8022 |
atgaatcttgtaattcttttaggcaggaacaattgaagttttttgccagcttattagatgataagcttgatgcttgtattcaaaagataaatatgctaaa |
7923 |
T |
|
| Q |
313 |
aggagatcttaggggaaaatcaatagctcttgaaacaaacaagattgataaccttaatagttctccttacttggactcaaatccaagtagctacttcaat |
412 |
Q |
| |
|
|||| ||| || ||||||| ||||||||| |||| || ||||| ||||||| |||| |||| |||| |||||| |||||||||||||| | ||||||| |
|
|
| T |
7922 |
aggatatcataagggaaaagcaatagctcatgaatcacacaaggttgataaacttattagtattcctcacttggcctcaaatccaagtaattgcttcaat |
7823 |
T |
|
| Q |
413 |
ctcgtgcaaaacaacatgtctcaagcacacatttatcctccattgatgaatat |
465 |
Q |
| |
|
|| ||||| ||||||||||||||| | ||||| ||||||||||| ||||| |
|
|
| T |
7822 |
ttcatgcaa---aacatgtctcaagcagaaatttaacctccattgattaatat |
7773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 170
Target Start/End: Complemental strand, 129622 - 129567
Alignment:
| Q |
115 |
taatgttcaagaatattttaaagaaaggatgaaaaaagttgaatttgagatttcca |
170 |
Q |
| |
|
|||| |||||||||||| ||| |||||||| |||||||||||||| ||||||||| |
|
|
| T |
129622 |
taatattcaagaatattataagaaaaggatggaaaaagttgaatttaagatttcca |
129567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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