View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19971_high_54 (Length: 229)

Name: NF19971_high_54
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19971_high_54
NF19971_high_54
[»] chr1 (1 HSPs)
chr1 (142-228)||(41474610-41474695)
[»] chr6 (8 HSPs)
chr6 (186-228)||(20014729-20014771)
chr6 (161-228)||(23158120-23158187)
chr6 (186-228)||(31575117-31575159)
chr6 (197-228)||(19378399-19378430)
chr6 (189-228)||(20879077-20879116)
chr6 (197-228)||(23100373-23100404)
chr6 (161-228)||(18763105-18763172)
chr6 (187-228)||(21686115-21686156)
[»] chr5 (3 HSPs)
chr5 (187-228)||(22542960-22543001)
chr5 (186-228)||(41612841-41612883)
chr5 (187-228)||(19832217-19832258)
[»] chr4 (1 HSPs)
chr4 (186-228)||(581438-581480)


Alignment Details
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 41474695 - 41474610
Alignment:
Q  142 agatagttattaaacttataagggcaatttagtatttnnnnnnntaggctacatcaaacaaaaatattgcctttattaataggtata 228  Q
    ||||||||||||||||| |||||||||||||  ||||        |||||||| |||| ||||||||||||||||||||||||||||    
T  41474695 agatagttattaaacttgtaagggcaatttatgatttttttaaaaaggctacaccaaa-aaaaatattgcctttattaataggtata 41474610  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 20014771 - 20014729
Alignment:
Q  186 taggctacatcaaacaaaaatattgcctttattaataggtata 228  Q
    ||||||||| ||||||||| |||||||||||||||||||||||    
T  20014771 taggctacaccaaacaaaagtattgcctttattaataggtata 20014729  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 23158187 - 23158120
Alignment:
Q  161 aagggcaatttagtatttnnnnnnntaggctacatcaaacaaaaatattgcctttattaataggtata 228  Q
    ||||||||||||||||||       ||||||||| ||||||||| ||||| |||||||||||||||||    
T  23158187 aagggcaatttagtatttaaaaaaataggctacaccaaacaaaagtattgtctttattaataggtata 23158120  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 31575117 - 31575159
Alignment:
Q  186 taggctacatcaaacaaaaatattgcctttattaataggtata 228  Q
    ||||||||||||||| ||| |||||||||||||||||||||||    
T  31575117 taggctacatcaaaccaaagtattgcctttattaataggtata 31575159  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 228
Target Start/End: Complemental strand, 19378430 - 19378399
Alignment:
Q  197 aaacaaaaatattgcctttattaataggtata 228  Q
    ||||||||||||||||||||||||||||||||    
T  19378430 aaacaaaaatattgcctttattaataggtata 19378399  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 20879116 - 20879077
Alignment:
Q  189 gctacatcaaacaaaaatattgcctttattaataggtata 228  Q
    |||||| |||| ||||||||||||||||||||||||||||    
T  20879116 gctacaccaaaaaaaaatattgcctttattaataggtata 20879077  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 228
Target Start/End: Original strand, 23100373 - 23100404
Alignment:
Q  197 aaacaaaaatattgcctttattaataggtata 228  Q
    ||||||||||||||||||||||||||||||||    
T  23100373 aaacaaaaatattgcctttattaataggtata 23100404  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 18763172 - 18763105
Alignment:
Q  161 aagggcaatttagtatttnnnnnnntaggctacatcaaacaaaaatattgcctttattaataggtata 228  Q
    ||||||||||||||||||       ||||||||| ||||||||| || || |||||||||||||||||    
T  18763172 aagggcaatttagtatttaaaaaaataggctacaccaaacaaaagtactgtctttattaataggtata 18763105  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 21686115 - 21686156
Alignment:
Q  187 aggctacatcaaacaaaaatattgcctttattaataggtata 228  Q
    |||||||| |||| |||| |||||||||||||||||||||||    
T  21686115 aggctacaccaaaaaaaagtattgcctttattaataggtata 21686156  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 22543001 - 22542960
Alignment:
Q  187 aggctacatcaaacaaaaatattgcctttattaataggtata 228  Q
    ||||||||||||| |||| |||||||||||||||||||||||    
T  22543001 aggctacatcaaaaaaaagtattgcctttattaataggtata 22542960  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 41612883 - 41612841
Alignment:
Q  186 taggctacatcaaacaaaaatattgcctttattaataggtata 228  Q
    ||||||||| ||||| ||| |||||||||||||||||||||||    
T  41612883 taggctacaccaaaccaaagtattgcctttattaataggtata 41612841  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 19832258 - 19832217
Alignment:
Q  187 aggctacatcaaacaaaaatattgcctttattaataggtata 228  Q
    |||||||| |||| |||| |||||||||||||||||||||||    
T  19832258 aggctacaccaaaaaaaagtattgcctttattaataggtata 19832217  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 581480 - 581438
Alignment:
Q  186 taggctacatcaaacaaaaatattgcctttattaataggtata 228  Q
    ||||||||| ||||| ||| |||||||||||||||||||||||    
T  581480 taggctacaccaaactaaagtattgcctttattaataggtata 581438  T

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