View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19971_high_56 (Length: 227)
Name: NF19971_high_56
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19971_high_56 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 36 - 227
Target Start/End: Original strand, 41221805 - 41221997
Alignment:
| Q |
36 |
agataaaaataaagaaaacagaaatttgggtagccaaaaactaaatccagaccatagataataaatcatatgaaatgaaaataaggtagctctaaattga |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41221805 |
agataaaaataaagaaaacagaaatttgggtagccaaaaactaaatccagaccatagataataaatcatatgaaatgaaaataaggtagctctaaattga |
41221904 |
T |
|
| Q |
136 |
tggtaaaaatttggaccgttaaaaaaggaactaaattc-acaaagagtcatattttaattgactccaaaaattgcaaatttatctgcacaaat |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41221905 |
tggtaaaaatttggaccgttaaaaaaggaactaaattctacaaagagtcatattttaattgacttcaaaaattgcaaatttatctgcacaaat |
41221997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 41223471 - 41223597
Alignment:
| Q |
20 |
aaatatgttggcatccagataaaaataaagaaaacagaaatttgggtagccaaaaactaaatccagaccatagataataaatcatatgaaatgaaaataa |
119 |
Q |
| |
|
|||||||||| || ||| |||||||||||||||||| ||| || || |||||||||| ||||||| || | ||||||||| |||||||||| |||| | |
|
|
| T |
41223471 |
aaatatgttgacacccaaataaaaataaagaaaacaaaaaatttgggagccaaaaacgaaatccatacagcatataataaattatatgaaatg-aaatta |
41223569 |
T |
|
| Q |
120 |
ggtagctctaa--attgatggtaaaaat |
145 |
Q |
| |
|
||||||||||| ||||||||||||||| |
|
|
| T |
41223570 |
ggtagctctaatcattgatggtaaaaat |
41223597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University