View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19971_high_57 (Length: 227)
Name: NF19971_high_57
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19971_high_57 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 41314477 - 41314256
Alignment:
| Q |
6 |
actcaacaaacaagagttgaagatcaaagggcaacaaagacgagcggaaatcaatggcagcgaaatgagcaagaatatcatgaagattaacaaagataat |
105 |
Q |
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| T |
41314477 |
actcaacaaacaagagttgaagatcaaagggcaacaaagacgagcggaaatcaatggcagcaaaatgagcaagaatatcatgaagattaacaaagataat |
41314378 |
T |
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| Q |
106 |
aatggtaagagcaataagaagaacaacgaggcccgaacgggcttcaggagaaagctgggccacaaaaccggaacaaaggatcacggtggcaaatagatat |
205 |
Q |
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| T |
41314377 |
aatggtaagagcaataagaagaacaacgaggcccgaacgggcttcaggagaaagctgggccacaaaaccggaacaaaggatcacggtggcaaatagatat |
41314278 |
T |
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| Q |
206 |
aggcctgcgtttatgtattcgt |
227 |
Q |
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|||||||||||||||||||||| |
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| T |
41314277 |
aggcctgcgtttatgtattcgt |
41314256 |
T |
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