View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19971_high_58 (Length: 216)
Name: NF19971_high_58
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19971_high_58 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 40806926 - 40807114
Alignment:
| Q |
12 |
agaagaattaatttcatatttttaacatggcataataattttaacatgattgatattatggtattttgggtgtataataaaagttccaatatgctaaata |
111 |
Q |
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| T |
40806926 |
agaagaattaatttcatatttttaacatggcataataattttaacatgattgatattatggtattttgggtgtataataaaagttccaatatgctaaata |
40807025 |
T |
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| Q |
112 |
caatattcaaaacttatcatgacaagctcatctcaccatcagtagcgcaagaacatcgcacattcgagttgattgtgttggagtaagat |
200 |
Q |
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| T |
40807026 |
caatattcaaaacttatcatgacatgctcatctcaccatcagtaatgcaagaacatcgcacattcgagttgattgtgttggagtaagat |
40807114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 200
Target Start/End: Original strand, 40817843 - 40817993
Alignment:
| Q |
50 |
ttttaacatgattgatattatggtattttgggtgtataataaaagttccaatatgctaaatacaatattcaaaacttatcatgacaagctcatctcacca |
149 |
Q |
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| T |
40817843 |
ttttaatatgattgattttcaagtattttatgggtatactgaaagtttccatatgttaaatacaatattcaacactcctcatgacaaactcattgcacct |
40817942 |
T |
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| Q |
150 |
tcagtagcgcaagaacatcgcacattcgagttgattgtgttggagtaagat |
200 |
Q |
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| T |
40817943 |
gaagtagtgccagaacattgcacactcgagttgattgtgcttgagtaagat |
40817993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 200
Target Start/End: Complemental strand, 9517760 - 9517610
Alignment:
| Q |
50 |
ttttaacatgattgatattatggtattttgggtgtataataaaagttccaatatgctaaatacaatattcaaaacttatcatgacaagctcatctcacca |
149 |
Q |
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| T |
9517760 |
ttttaacatgattgattttcaagtattttatgggtataatgaaagtttccatatgttaaacacaatattcaacactcattatgacaaacttatcgcacct |
9517661 |
T |
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| Q |
150 |
tcagtagcgcaagaacatcgcacattcgagttgattgtgttggagtaagat |
200 |
Q |
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| T |
9517660 |
gaagtagtgccagaacattgcacactcgagttgattgtgtctgagtaagat |
9517610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 188
Target Start/End: Original strand, 5119988 - 5120126
Alignment:
| Q |
49 |
attttaacatgattgatattatggtattttgggtgtataataaaagttccaatatgctaaatacaatattcaaaacttatcatgacaagctcatctcacc |
148 |
Q |
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| T |
5119988 |
attttgacatgattgattttcatgtattttgggggtataatcaaagtttccatatgctaaa-atgatattcaaaacttgtagtgacgaactcgtctcacc |
5120086 |
T |
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| Q |
149 |
atcagtagcgcaagaacatcgcacattcgagttgattgtg |
188 |
Q |
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| T |
5120087 |
tgaagtaatgcaagaacatggcacactcgagttgattgtg |
5120126 |
T |
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