View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19971_low_1 (Length: 789)
Name: NF19971_low_1
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19971_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 679; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 679; E-Value: 0
Query Start/End: Original strand, 52 - 778
Target Start/End: Complemental strand, 19310705 - 19309980
Alignment:
| Q |
52 |
accactgcacgatcctcaacttctatatcttcattattcaattgtgttgcatcttcaaactctgagcaagttgagttgtcatctgagattactagttcat |
151 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
19310705 |
accactgcacgatcctcaacttctatatcttcattattcaattgtgttgcatctataaactctgagcaagttgagctgtcatctgagattactagttcat |
19310606 |
T |
|
| Q |
152 |
tgttaacttctttatcgggagtctcttcatcgtctaatagcagtgattcaaaattgttttgaacttcaagattctgtaaatgagttgtgtcactggatcc |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
19310605 |
tgttaacttctttatcgggagtctcttcatcgtctaatagcagtgattcaaaattgttttgaactttaagattctgtaaatgagttgtgtcactggatcc |
19310506 |
T |
|
| Q |
252 |
agcaatagcctgagctgctggaattacacctgttgtggggttttcgcctttgtataaatcagtttgcttgctctacaagttaactgagttattgtttgct |
351 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
19310505 |
agcaatagcctgagctgctggaattacacctgttgtagggttttcgcctttgtataaatcagtttgcttgctctacaagttaactgaattattgtttgct |
19310406 |
T |
|
| Q |
352 |
ttctcagttccttcagtctgcaacacctccttattgtttctttctgaattctaccatccctaagtttcatgtaaacctgattaggagactttattcactt |
451 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
19310405 |
ttctcagttccttcagtctgcaacacctccttattgtttctttctgaattctaccatccctaagtttcatgtaaacctgattaggagac-ttattcactt |
19310307 |
T |
|
| Q |
452 |
acttcttgactataggttccttatcagtttcatcatcaacctgcttattcactttcttatagttatccaaataatgacctatgatgttgcattgagtaca |
551 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
19310306 |
acttcttgactataggttccttatcagtttgatcatcaacctgcttattcactttcttatagttatccaaataatgtcctatgatgttgcattgagtaca |
19310207 |
T |
|
| Q |
552 |
ataatatggtaaattttcatattttagttccacataaaaagtaaatccctttttgtccactagaattttatagcataatcgttgttgaagatccatgtcc |
651 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
19310206 |
ataatatggtaaattttcatattttagttccacataaaaagtaaatccctttctgtccactagaattttatagcataattgttgttgaagatccatgtcc |
19310107 |
T |
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| Q |
652 |
acaagcactctcacatactggccaaatgtcctatcaaattttgacctagtagtagcatcatatgtacatgttggagtaccaaaattgctagcaattgaaa |
751 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19310106 |
acaagcactctcacatactggccaaatgtcctatcaaattttgacctagtagtagcatcatatgtacatgttggagtaccaaaattgctagcaattgaaa |
19310007 |
T |
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| Q |
752 |
aaatgatctttggcctccaatattctt |
778 |
Q |
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||||||||||||||||||||||||||| |
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| T |
19310006 |
aaatgatctttggcctccaatattctt |
19309980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 19310843 - 19310810
Alignment:
| Q |
19 |
ggaatctcatcatctctttctaattatgcaaaaa |
52 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
19310843 |
ggaatctcatcatctctttctaattatgcaaaaa |
19310810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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