View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19971_low_13 (Length: 451)
Name: NF19971_low_13
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19971_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 19946661 - 19946534
Alignment:
| Q |
19 |
ggtttatgtccataatccaggtcattctctagggtccctaggaaatctgtatattaactgtggccacaatttgttttcttgagaacatcatctatcgctg |
118 |
Q |
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| T |
19946661 |
ggtttatgtccataacccaggtcattctctagggtccctaagaaatctgtatattaactgtggccacaatttgttttcttgagaacatcatctttcgctg |
19946562 |
T |
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| Q |
119 |
ttctttcttatagtgataccacaattaa |
146 |
Q |
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| T |
19946561 |
ttctttcttataatgataccacaattaa |
19946534 |
T |
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Target: chr2; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 273 - 439
Target Start/End: Complemental strand, 19946503 - 19946324
Alignment:
| Q |
273 |
tttttcctgaatctcttcccatgggtaagagactcga---cttcacatcaaaggtgttt----------tcaaaccctagaatttttccgagccacctat |
359 |
Q |
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|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
19946503 |
tttttcctgaatctcttcccatggttaagagactcgatgacttcacatcaaaggtgtttgaaggtgttttcaaaccctataatttttccgagccacctat |
19946404 |
T |
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| Q |
360 |
ttatatgattcctcccgcccttaaatcttggcgaccaagaaaataaaaaactcgcgcgtatgtctctcatatccctccta |
439 |
Q |
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| T |
19946403 |
ttatatgattcctcccgcccttaaaacttggcgaccaagaaaatagaaaactcgcgcgtatgcctcttgtatccctccta |
19946324 |
T |
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