View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19971_low_14 (Length: 445)
Name: NF19971_low_14
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19971_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Original strand, 45068309 - 45068718
Alignment:
| Q |
18 |
gacatgttaacacgaaatatttgaatataacttgatgtgttagtgtcgtacggacaccaaacacagctttgatgtgaagtgtcaatgctacatagatgat |
117 |
Q |
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| T |
45068309 |
gacatgttaacacgaaatatttgaatataacttgatgtgttagtgtcgtagggacaccaaacacagctttgatgtgaagtgtcaatgctacatagatgat |
45068408 |
T |
|
| Q |
118 |
agtcttgattcttgcctgttcaacatagatgaatttgcgattcttgtccgccaacaacgctggtataagggaatcaagcacattttgaacgcatgctccc |
217 |
Q |
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| T |
45068409 |
agtcttgattcttgcctgttcaacatagatgaatttgcgattcttgtccgccaacaacgctggtataagggaatcaagcacattttgaacgcatgctccc |
45068508 |
T |
|
| Q |
218 |
tgcattttgaataacaataaaacaaaatcaaaatcatgcaattgaattgagttaaagagagtgtccttagaagagtgaatgaataacctgaatggtgttg |
317 |
Q |
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| T |
45068509 |
tgcattttgaacaacaataaaacaaaatcaaaatcatgcaattgaattgagttaaagagagtgtccttagaagagtgaatgaataacctgaatggtgttg |
45068608 |
T |
|
| Q |
318 |
ttggaaccaacatagtactgatcaatggttttcaaccatccaacatcatcatgactatgagggactaggtgaacattgagcttcccaggaacaatggttg |
417 |
Q |
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| T |
45068609 |
ttggaaccaacatagtactgatcaatggttttcaaccatccaacatcatcatgactatgagggactaagtgaacattgagcttcccaggaacaatggttg |
45068708 |
T |
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| Q |
418 |
agttagtatt |
427 |
Q |
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| T |
45068709 |
agttagtatt |
45068718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 68 - 420
Target Start/End: Original strand, 3737919 - 3738270
Alignment:
| Q |
68 |
cggacaccaaacacagctttgatgtgaagtgtcaatgcta--catagatgatagtcttgattcttgcctgttcaacatagatgaatttgcgattcttgtc |
165 |
Q |
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|||||| |||| || ||||||||||||||| ||| ||||| |||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||| |
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| T |
3737919 |
cggacatcaaatacggctttgatgtgaagtctcagtgctatacatagatgatagtcttgactcttgcatgttcagcatagatgaatttgcgattcttgtc |
3738018 |
T |
|
| Q |
166 |
cgccaacaacgctggtataagggaatcaagcacattttgaacgcatgctccctgcattttgaataacaataaaacaaaatcaaaatcatgcaattgaatt |
265 |
Q |
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| T |
3738019 |
cgccaacaacgctggtataagggaatcaagcacactttgaacgcatgctctctgcattcacaacaatggttaaacaacataaaaatcatggaattcaatt |
3738118 |
T |
|
| Q |
266 |
gagttaaagagagtgtccttagaagagtgaatgaataacctgaatggtgttgttggaaccaacatagtactgatcaatggttttcaaccatccaacatc- |
364 |
Q |
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| T |
3738119 |
aaattaaagtgtgtg----tggaagaaaaagtgaatgacctgaatggtgtggttggaaccaacatagtactgatcaatggttttcaaccatccaacatca |
3738214 |
T |
|
| Q |
365 |
atcatgactatgagggactaggtgaacattgagcttcccaggaacaatggttgagt |
420 |
Q |
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| T |
3738215 |
atcatgaccatgagggaccaagtcaacattgagcttcccaggaacaatggttgagt |
3738270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 315 - 405
Target Start/End: Original strand, 32386495 - 32386585
Alignment:
| Q |
315 |
ttgttggaaccaacatagtactgatcaatggttttcaaccatccaacatcatcatgactatgagggactaggtgaacattgagcttcccag |
405 |
Q |
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| T |
32386495 |
ttgttggaaccaacatagtactgatcaacagtcttcaaccacccaacatcatcatgagtatgagcaaccagatgaacattgagcttcccag |
32386585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 370
Target Start/End: Original strand, 32400666 - 32400728
Alignment:
| Q |
308 |
aatggtgttgttggaaccaacatagtactgatcaatggttttcaaccatccaacatcatcatg |
370 |
Q |
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||||| ||||||||| ||||| ||||||||||||| ||| || | ||| |||||||||||||| |
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| T |
32400666 |
aatggagttgttggatccaacgtagtactgatcaacggtcttaagccaaccaacatcatcatg |
32400728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 370
Target Start/End: Complemental strand, 31848455 - 31848385
Alignment:
| Q |
300 |
ataacctgaatggtgttgttggaaccaacatagtactgatcaatggttttcaaccatccaacatcatcatg |
370 |
Q |
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| T |
31848455 |
ataacctgaatggaattgttggagccaacatagtattgatcaacagtcttaagccaaccaacatcatcatg |
31848385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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