View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19971_low_15 (Length: 438)
Name: NF19971_low_15
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19971_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 64 - 431
Target Start/End: Original strand, 49265395 - 49265761
Alignment:
| Q |
64 |
tctagtgtagtagtagagtttattaagtgaggaacttacccattcaacaagactacgctctccttgaggtcgtgtattatcaagagccctacgtcctgaa |
163 |
Q |
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|||||||||||||| | || |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
49265395 |
tctagtgtagtagttta-ttaattaagcgaggaacttacccattcaacaagactacgctctccttgcggtcgtgtattatcaagagccctgcgtcctgaa |
49265493 |
T |
|
| Q |
164 |
ataagttcgagcatgaccactccatagctatacacatcagattttatagttagttgtccggtcataagatattcaggggcacaataaccatatgttccca |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49265494 |
ataagttcgagcatgaccactccatagctatacacatcagatttaatagttagttgtccggtcataagatattcaggggcacaataaccatatgttccca |
49265593 |
T |
|
| Q |
264 |
ctacttgtgtggatacatgagtcatatcaccaattggtccaagttttgcaaacccaaaatctgataacttggcatgataattttcaccgagaaggacgtt |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
49265594 |
ctacttgtgtggatacatgagtcatatcaccaattggtccaagttttgcgaacccaaaatctgataacttggcatcataattttcaccgagaaggacgtt |
49265693 |
T |
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| Q |
364 |
ggatgactttaagtctctatatatcacagggggatttgccttatgcatatattccaacccctttgcta |
431 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49265694 |
ggatgactttaagtctctatatatcacagggggatttgccttatgcatatattccaacccctttgcta |
49265761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 211 - 430
Target Start/End: Complemental strand, 6603745 - 6603523
Alignment:
| Q |
211 |
agttagttgtccggtcataagatattcaggggcacaataaccatatgttcccactacttgtgtggatacatgagtcatatcaccaattggtccaagtttt |
310 |
Q |
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| T |
6603745 |
agttagttgaccagtcatagcatactccggggcacaatagccatatgttcccattacacgtgtggatacatgagtcttatcaccaactggaccaagtttt |
6603646 |
T |
|
| Q |
311 |
gcaaacccaaaatctgataacttggcatgataattttcaccgagaaggacgttggatgactttaagtctctatatatcacagggggatttgcctt---at |
407 |
Q |
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|| | |||||||||||||||||||| |||| || |||| | || |||| ||| ||||| |||||||||||||| |||||||||||||||||||| || |
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| T |
6603645 |
gccagcccaaaatctgataacttgggatgaaaaccttcatctaggaggatgttagatgattttaagtctctatagatcacagggggatttgccttgtcat |
6603546 |
T |
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| Q |
408 |
gcatatattccaacccctttgct |
430 |
Q |
| |
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||| |||||||| ||||||||| |
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| T |
6603545 |
gcaagtattccaatccctttgct |
6603523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 242 - 344
Target Start/End: Complemental strand, 40923910 - 40923808
Alignment:
| Q |
242 |
gcacaataaccatatgttcccactacttgtgtggatacatgagtcatatcaccaattggtccaagttttgcaaacccaaaatctgataacttggcatgat |
341 |
Q |
| |
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||||| || ||||||||||||| ||| ||| || ||||||||||||||||| ||||| || | |||||| || |||||||| |||||||||| ||||| |
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| T |
40923910 |
gcacagtagccatatgttcccataactcttgttgaaacatgagtcatatcaccgattggacctacttttgccaagccaaaatcggataacttgggatgat |
40923811 |
T |
|
| Q |
342 |
aat |
344 |
Q |
| |
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||| |
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| T |
40923810 |
aat |
40923808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 242 - 344
Target Start/End: Complemental strand, 13172452 - 13172350
Alignment:
| Q |
242 |
gcacaataaccatatgttcccactacttgtgtggatacatgagtcatatcaccaattggtccaagttttgcaaacccaaaatctgataacttggcatgat |
341 |
Q |
| |
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|||||||| ||||||||||||| ||| ||| || ||||||||| ||||||||||||| || | |||||| || || ||||| |||||||||| ||||| |
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| T |
13172452 |
gcacaatacccatatgttcccattacccttgttgacacatgagtcttatcaccaattggacctacttttgccaagccgaaatcagataacttgggatgat |
13172353 |
T |
|
| Q |
342 |
aat |
344 |
Q |
| |
|
||| |
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|
| T |
13172352 |
aat |
13172350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 263
Target Start/End: Original strand, 52960224 - 52960296
Alignment:
| Q |
191 |
ctatacacatcagattttatagttagttgtccggtcataagatattcaggggcacaataaccatatgttccca |
263 |
Q |
| |
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||||| ||||| ||||||| |||||||||||| |||||| ||||||||| ||||| |||||||| ||||||| |
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| T |
52960224 |
ctatatacatctgattttacagttagttgtccagtcatagcatattcaggagcacagtaaccataagttccca |
52960296 |
T |
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