View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19971_low_16 (Length: 426)
Name: NF19971_low_16
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19971_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 20 - 411
Target Start/End: Complemental strand, 41891242 - 41890851
Alignment:
| Q |
20 |
ttgcaatcattggatattggacttttggacaagatgttaatgataatatactaatgtcacttgaaaaaccttcatggcttattgcctctgctaacttgat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41891242 |
ttgcaatcattggatattggacttttggacaagatgttaatgataatatactaatgtcacttgaaaaaccttcatggcttattgcctctgctaacttgat |
41891143 |
T |
|
| Q |
120 |
ggtattcatccatgttgttggtagctatcaggtatcaactattaatgtaaaaccaattcctcaaatttgtgaaaatagtgtcaaatatttttgtgcaaat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41891142 |
ggtattcatccatgttgttggtagctatcaggtatcaactattaatgtaaaaccaattcctcaaatttgtgaaaatagtgtcaaatatttttgtgcaaat |
41891043 |
T |
|
| Q |
220 |
attttttcactgtcttttgtacaaatatttgaaaatgtcttaacgnnnnnnngtgattgaaagtgaaaacaaaagtgaaaatagaaaaagttttcagaaa |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41891042 |
attttttcactgtcttttgtacaaatatttgaaaatgtcttaacgtttttttgtgattgaaagtgaaaacaaaagtgaaaatagaaaaagttttcagaaa |
41890943 |
T |
|
| Q |
320 |
ctaaacagatcttaaattttcttttctgatcggtggggtaaaaatatattataggtttatgcaatgcctgtttttgatttgattgagaggat |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41890942 |
ctaaacagatcttaaattttcttttctgatcggtgaggtaaaaatatattataggtttatgcaatgcctgtttttgatttgattgagaggat |
41890851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 31 - 153
Target Start/End: Complemental strand, 41896807 - 41896685
Alignment:
| Q |
31 |
ggatattggacttttggacaagatgttaatgataatatactaatgtcacttgaaaaaccttcatggcttattgcctctgctaacttgatggtattcatcc |
130 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||| ||||| ||||||||||||| ||||||||||||| |||| |||||||| ||||||||||||||| |
|
|
| T |
41896807 |
ggatattgggcttttggacaagatgttgatgataacatacttatgtcacttgaaagaccttcatggcttgttgcttctgctaatttgatggtattcatca |
41896708 |
T |
|
| Q |
131 |
atgttgttggtagctatcaggta |
153 |
Q |
| |
|
||||| |||||||||| |||||| |
|
|
| T |
41896707 |
atgttcttggtagctaccaggta |
41896685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 406
Target Start/End: Complemental strand, 41896598 - 41896522
Alignment:
| Q |
330 |
cttaaattttcttttctgatcggtggggtaaaaatatattataggtttatgcaatgcctgtttttgatttgattgag |
406 |
Q |
| |
|
||||||||||||||| |||| ||| | ||||||| |||||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
41896598 |
cttaaattttcttttttgattaatggcgcgaaaatatgttataggtttatgccatgcctgttttcgacttgattgag |
41896522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 28 - 149
Target Start/End: Original strand, 22550700 - 22550821
Alignment:
| Q |
28 |
attggatattggacttttggacaagatgttaatgataatatactaatgtcacttgaaaaaccttcatggcttattgcctctgctaacttgatggtattca |
127 |
Q |
| |
|
|||||||||||| | |||||| ||||||| | |||||| | || ||||||||||||| ||| | ||||| |||||||||||||||||||||||||||| |
|
|
| T |
22550700 |
attggatattgggcatttggaagagatgttgaagataatgtgcttatgtcacttgaaagaccagcttggctcattgcctctgctaacttgatggtattca |
22550799 |
T |
|
| Q |
128 |
tccatgttgttggtagctatca |
149 |
Q |
| |
|
| ||||||||||| || ||||| |
|
|
| T |
22550800 |
ttcatgttgttggaagttatca |
22550821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 374 - 411
Target Start/End: Original strand, 22550823 - 22550860
Alignment:
| Q |
374 |
gtttatgcaatgcctgtttttgatttgattgagaggat |
411 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
22550823 |
gtttatgctatgcctgtttttgatttgattgagaggat |
22550860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University