View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19971_low_18 (Length: 419)
Name: NF19971_low_18
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19971_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 30314154 - 30314564
Alignment:
| Q |
1 |
gacaaccaggaccttagagtattagatcttgccatccctgttaacagacccggtcaatttcaggtaatatggcgttgttactttttctcatatcattctc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30314154 |
gacaaccaggaccttagagtattagatcttgccatccctgttaacagacccggtcaatttcaggtaatatggcgttgttactttttctcatatcattctc |
30314253 |
T |
|
| Q |
101 |
agtcatgtatacataattacatatcatagttttaaactgtggtatgcaacggcgcctagaggtctctacagcatatcacaatatagaaattgacaccgca |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30314254 |
agtcatgtatacataattacatatcatagttttaaactgtggtatgcaacggcgcctagaggtctctacagcatatcacaatatagaaattgacaccgca |
30314353 |
T |
|
| Q |
201 |
ttggtttcattttcgcacattttatcttaatataaatgtttaaatcggaattgactaattataactgcatgcacaattttaaaccatctatacatttata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30314354 |
ttggtttcattttcgcacattttatcttaatataaatgtttaaaacggaattgactaattataactgcatgcacaattttaaaccatctatacatttata |
30314453 |
T |
|
| Q |
301 |
accacgttttcttttctactttttcctcgatctcttaccatttatcattgttcttcctttcgaacagtctttctcattgtctggaaatcaaaaccaacaa |
400 |
Q |
| |
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||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30314454 |
accacattttcttttctactttttcatcgatctcttaccatttatcattgttcttcctttcgaacagtctttctcattgtctggaaatcaaaaccaacaa |
30314553 |
T |
|
| Q |
401 |
tccttcttctc |
411 |
Q |
| |
|
||||||||||| |
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| T |
30314554 |
tccttcttctc |
30314564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 30290596 - 30290902
Alignment:
| Q |
1 |
gacaaccaggaccttagagtattagatcttgccatccctgttaacagacccggtcaatttcaggtaatatggcgttgttactttttctcatatcattctc |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||| ||||| ||||||||||||||||||||| || | |
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| T |
30290596 |
gacaacgaggaccttagagtattagatcttgccatccccgttaacaggcctggtcaatttcaggtaaaatggcattgttactttttctcatatcactccc |
30290695 |
T |
|
| Q |
101 |
agtcatgtatacataattacatatcatagttttaaactgtggtatgcaacggcgcctagaggtctctacagcatatcacaatatagaaattgacaccgca |
200 |
Q |
| |
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||||||||||||||| |||||| ||||||| || |||||||||| || |||||| ||||||| |||||||||||||||||||||| |||||| |
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| T |
30290696 |
agtcatgtatacata-ttacat-------ttttaaattgcggtatgcaacagcatctagagacctctacaacatatcacaatatagaaattgataccgca |
30290787 |
T |
|
| Q |
201 |
ttggtttcattttcgcacattttatcttaatataaatgtttaaatcggaattgactaattataactgcatgcacaattttaaaccatctatacatttata |
300 |
Q |
| |
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||||| |||| ||||||||||| |||||| ||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
30290788 |
ttggtctcatcttcgcacatttgatcttatattaaatgtttgtaacggaattgactaattataactgcatgcacaatttaaaaccatctatacatatata |
30290887 |
T |
|
| Q |
301 |
accacgttttctttt |
315 |
Q |
| |
|
|||| ||||||||| |
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|
| T |
30290888 |
tccacattttctttt |
30290902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 132 - 411
Target Start/End: Original strand, 30303388 - 30303676
Alignment:
| Q |
132 |
ttaaactgtggtatgcaacggcgcctagaggtctctacagcatatcacaatatagaaattgacaccgcattggtttcattttcgcacattttatcttaat |
231 |
Q |
| |
|
||||| || |||||||||| || ||||| |||| |||| |||||||||||| ||||||||| ||||||||||| |||||||| || ||| ||||||||| |
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| T |
30303388 |
ttaaattgcggtatgcaacatcgtctagatgtctgtacaacatatcacaatagagaaattgataccgcattggtctcattttctcatattctatcttaat |
30303487 |
T |
|
| Q |
232 |
ataaatgtttaaatcggaattgactaattataactgcatgcacaattttaaaccatctatacatttataaccacgttttcttttctactttttcctcgat |
331 |
Q |
| |
|
|||||||| | | || |||||||||||||||||||||||||||||| |||||||||| |||| |||| |||| ||||||||||| |||||| ||||| |
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| T |
30303488 |
ataaatgtctgtaacgtgattgactaattataactgcatgcacaatttaaaaccatctagacatatatatccacattttcttttctgctttttattcgat |
30303587 |
T |
|
| Q |
332 |
ctcttaccatttatcattgttct---------tcctttcgaacagtctttctcattgtctggaaatcaaaaccaacaatccttcttctc |
411 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
30303588 |
ctcttaccatttatcattgttctgtctttgactcctttccaacagtctttctcattgtctggaagtcaaaaccaacagtccttcttctc |
30303676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 30303285 - 30303377
Alignment:
| Q |
1 |
gacaaccaggaccttagagtattagatcttgccatccctgttaacagacccggtcaatttcaggtaatatggcgttgttactttttctcatat |
93 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30303285 |
gacaaccaggaccttagagtattagatcttgccatccctgttaacagacccggtcaatttcaggtaatatggcgatgttactttttctcatat |
30303377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 319 - 411
Target Start/End: Original strand, 30290930 - 30291022
Alignment:
| Q |
319 |
ctttttcctcgatctcttaccatttatcattgttcttcctttcgaacagtctttctcattgtctggaaatcaaaaccaacaatccttcttctc |
411 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30290930 |
ctttttcttcgatctcttaccatttatcattgttcttcctttccaacagtctttctcattgtctggaaatcaaaaccaacaatccttcttctc |
30291022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 8 - 241
Target Start/End: Original strand, 30298108 - 30298333
Alignment:
| Q |
8 |
aggaccttagagtattagatcttgccatccctgttaacagacccggtcaatttcaggtaatatggcgttgttactttttctcatatcattctcagtcatg |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| | |||||||||||||||||| || || ||||| |
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| T |
30298108 |
aggatcttagagtattagatcttgccatccccgttaacagacccggtaaatttcaggtaatatggcactcttactttttctcatatcactcccaatcatg |
30298207 |
T |
|
| Q |
108 |
tatacataattacatatcatagttttaaactgtggtatgcaacggcgcctagaggtctctacagcatatcacaatatagaaattgacaccgcattggttt |
207 |
Q |
| |
|
|| | ||||| | |||||||| || |||||||||| ||| ||||||| ||||||| |||||||||||||| |||| || | ||||||||| |
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|
| T |
30298208 |
ta--------ttcatattaaggttttaaattgcggtatgcaacagcgtctagaggcctctacaacatatcacaatataaaaatcgataacgcattggtca |
30298299 |
T |
|
| Q |
208 |
cattttcgcacattttatcttaatataaatgttt |
241 |
Q |
| |
|
||||||| |||||| | ||| |||||||||||| |
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|
| T |
30298300 |
cattttctcacattatttctatatataaatgttt |
30298333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 30285632 - 30285701
Alignment:
| Q |
1 |
gacaaccaggaccttagagtattagatcttgccatccctgttaacagacccggtcaatttcaggtaatat |
70 |
Q |
| |
|
|||||| |||| |||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||| |
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|
| T |
30285632 |
gacaacaaggatcttagagtcttagatcttgccatccccgttaacaggcccggtcaatttcaggtaatat |
30285701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 355 - 411
Target Start/End: Original strand, 30298437 - 30298493
Alignment:
| Q |
355 |
tcctttcgaacagtctttctcattgtctggaaatcaaaaccaacaatccttcttctc |
411 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
30298437 |
tcctttccaacagtctttctcattgtctggaagtcaaaaccaacagtccttcttctc |
30298493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 30285995 - 30286043
Alignment:
| Q |
363 |
aacagtctttctcattgtctggaaatcaaaaccaacaatccttcttctc |
411 |
Q |
| |
|
||||||||||||||||||||| || | ||||||||||||||||| |||| |
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|
| T |
30285995 |
aacagtctttctcattgtctgaaagtgaaaaccaacaatccttcctctc |
30286043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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