View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19971_low_2 (Length: 679)
Name: NF19971_low_2
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19971_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 203 - 560
Target Start/End: Complemental strand, 47477857 - 47477495
Alignment:
| Q |
203 |
ggtttcaaagttcggtttagggtgtatggccctcagtggaggatacaatgatcctcttcctgaagaaattggcatttccgtaattaatcatgcattcagt |
302 |
Q |
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| T |
47477857 |
ggtttcaaagttcggtttagggtgtatggccctcagtggaggatacaatgatcctcttcctgaagaaattggcatttccgtaattaatcatgcattcagt |
47477758 |
T |
|
| Q |
303 |
aaaggcatcacnnnnnnngacaccgctgatgtttatggactcgatggtgggaatgaaattttggttggaaaggtatatacatattaataataactacaag |
402 |
Q |
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| T |
47477757 |
aaaggcatcactttttttgacaccgctgatgtttatggactcgatggtgggaatgaaattttggttggaaaggtatatacatattaataataactacaag |
47477658 |
T |
|
| Q |
403 |
aattggtactttgccaagaggtcctgggtttaaatccggacagacgagtaaatagtaatctcacaactaactaattagtaacatttatcatt-nnnnnnn |
501 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
47477657 |
aattggtactttgccaagaggtcctgggtttaaatctggacagacgagtaaatagtaatctcacaactaactaactagtaacatttatcattaaaaaaaa |
47477558 |
T |
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| Q |
502 |
tgccaagaatttcttttatgttctaaatttaataccgcaattg----ttatgccaatttgagc |
560 |
Q |
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| T |
47477557 |
tgccaagaatttcttttatgttctaaatttaataccgcaattgaaacttatgccaatttgagc |
47477495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 47478045 - 47477933
Alignment:
| Q |
18 |
acacaaacacaaacacaaactgaactaattcctcatgtctcacttggaacccaaggctttcaggtatcatcacttcactcacttgtacacttacacttac |
117 |
Q |
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| T |
47478045 |
acacaaacacaaacacaaactgaactaattcctcatgtctcacttggaacccaaggctttcaggtatcatcacttcactcacttgtacacttacacttac |
47477946 |
T |
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| Q |
118 |
atatacaattgtc |
130 |
Q |
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|||||||| |||| |
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| T |
47477945 |
atatacaaatgtc |
47477933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 594 - 665
Target Start/End: Complemental strand, 47477461 - 47477390
Alignment:
| Q |
594 |
gttgactaggctttaaagcaactgcccagagaaaagatccaggtggctacaaaatttggtatatccagaagt |
665 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47477461 |
gttgactaggctttaaagcaactgcccagagaaaagatccaggtggctacaaaatttggtatatccagaagt |
47477390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 594 - 664
Target Start/End: Complemental strand, 47474139 - 47474069
Alignment:
| Q |
594 |
gttgactaggctttaaagcaactgcccagagaaaagatccaggtggctacaaaatttggtatatccagaag |
664 |
Q |
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||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
47474139 |
gttgactaggcattaaagcaattgcccagagaaaagatccagttggctacaaaatttggtatatctagaag |
47474069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 594 - 664
Target Start/End: Complemental strand, 47486754 - 47486684
Alignment:
| Q |
594 |
gttgactaggctttaaagcaactgcccagagaaaagatccaggtggctacaaaatttggtatatccagaag |
664 |
Q |
| |
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||||||||||||||||||||||| || ||||||||| ||||||||||||||||||| |||||| ||||||| |
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| T |
47486754 |
gttgactaggctttaaagcaactacctagagaaaaggtccaggtggctacaaaattcggtatagccagaag |
47486684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 222 - 377
Target Start/End: Complemental strand, 47487012 - 47486857
Alignment:
| Q |
222 |
gggtgtatggccctcagtggaggatacaatgatcctcttcctgaagaaattggcatttccgtaattaatcatgcattcagtaaaggcatcacnnnnnnng |
321 |
Q |
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|||||||||| ||| |||||| |||| ||||| ||||||||| || ||| |||||| ||||||| ||||||| |||||||||||||| | |
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| T |
47487012 |
gggtgtatgggactcggtggagcctacagtgatcttcttcctgagcaagatggtatttccataattaagtatgcatttagtaaaggcatcactttatttg |
47486913 |
T |
|
| Q |
322 |
acaccgctgatgtttatggactcgatggtgggaatgaaattttggttggaaaggta |
377 |
Q |
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| || ||||||||||||||| |||||||||| |||||||| ||||||||||||||| |
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| T |
47486912 |
atactgctgatgtttatggagtcgatggtggtaatgaaatattggttggaaaggta |
47486857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 203 - 308
Target Start/End: Complemental strand, 47474365 - 47474260
Alignment:
| Q |
203 |
ggtttcaaagttcggtttagggtgtatggccctcagtggaggatacaatgatcctcttcctgaagaaattggcatttccgtaattaatcatgcattcagt |
302 |
Q |
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||||||||| || ||||| |||||||||| |||| ||||| ||||||||||||||||||||| || ||| |||||||||||||| |||| |||||| |
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| T |
47474365 |
ggtttcaaaattgggtttcgggtgtatgggactcactggagcttacaatgatcctcttcctgaacaagatggtatttccgtaattaactatgctttcagt |
47474266 |
T |
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| Q |
303 |
aaaggc |
308 |
Q |
| |
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|||||| |
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| T |
47474265 |
aaaggc |
47474260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 47487078 - 47487029
Alignment:
| Q |
33 |
caaactgaactaattcctcatgtctcacttggaacccaaggctttcaggt |
82 |
Q |
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||||| || |||||||||||||| ||||||||||||||||||||||||| |
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| T |
47487078 |
caaaccgagctaattcctcatgttacacttggaacccaaggctttcaggt |
47487029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 420 - 476
Target Start/End: Original strand, 2097125 - 2097181
Alignment:
| Q |
420 |
gaggtcctgggtttaaatccggacagacgagtaaatagtaatctcacaactaactaa |
476 |
Q |
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||||||||||||| ||| ||||||| ||||||||| |||||| |||||||||||| |
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| T |
2097125 |
gaggtcctgggttcaaacccggacaagggagtaaatattaatctaacaactaactaa |
2097181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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