View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19971_low_21 (Length: 408)
Name: NF19971_low_21
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19971_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 17 - 394
Target Start/End: Original strand, 45518347 - 45518719
Alignment:
| Q |
17 |
cccttaacaattctctggccaactctggtgatgattgcatccctatccctatatataattaaaataatgatatagccaaactaagagagtatagatatga |
116 |
Q |
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| T |
45518347 |
cccttaacaattctctggccaactctggtgatgattgcatccctatccctata----attaaaataatgatatagccaaactaagag--tatagatatga |
45518440 |
T |
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| Q |
117 |
tttatttaagaaaagaaaaaatggtaaaggagaattaaaaatgaagaagtgttaattaacaacat-actcatgattgcaataaaataaagtataggaaaa |
215 |
Q |
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| T |
45518441 |
tttatttaagaaaagaaaaaatggtaaaggagaattaaaaatgaagaagtgttaattaacaacattactcatgattgaaataaaataaagtataggaaaa |
45518540 |
T |
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| Q |
216 |
tgaataattaaaatgatacaagttgtcttatataatggaattttagtgtatgctgagaacatggctaaggtggctaattaaattcctctattcattaatt |
315 |
Q |
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| T |
45518541 |
tgaataattaaaatgatacaagttgtcttatataatggaattttagtgtatgctgagaacatggctaaggtggctaattaaattcctctattcattaatt |
45518640 |
T |
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| Q |
316 |
attatggattcttatgttacttgaacggtgccacaaggcaaacacaaaagaacagaccaaggacacacatcgaaataga |
394 |
Q |
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| T |
45518641 |
attatggattcttatgttacttgaacggtgccacaaggcaaacacaaaagaacagaccaaggacacacatcgaaataga |
45518719 |
T |
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