View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19971_low_22 (Length: 406)
Name: NF19971_low_22
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19971_low_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 74 - 402
Target Start/End: Original strand, 49265021 - 49265349
Alignment:
| Q |
74 |
ttgtcatgaattttctttaattagctgaatgaagtaatatatttagagtttgggtctaagatgctcatttcccatgttgaaatatcactcttatcactca |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
49265021 |
ttgtcatgaattttctttaattagctgaatgaagtaatatatttagagtttgggtctaagatgctcatttcccatgttgaaatatcactcttaacactca |
49265120 |
T |
|
| Q |
174 |
atcatcatagatcttttcaatttgggtgatgagtcagttctggtcatgtatgtaagtgcatccacaatttcaccaatgagaggccttgcagaagcttgtg |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49265121 |
atcatcatagatcttttcaatttgggtgatgagtcagttctggtcatgtatgtaagtgcatccacaatttcaccaatgagaggccttgcagaagcttgtg |
49265220 |
T |
|
| Q |
274 |
tttgcacacatattgcagcaatagcaactgcttgtttaagtcctcccattggacaacgaccttgaagtagagggtcaaccaatttgataaagttcttacg |
373 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49265221 |
tttgcacacacattgccgcaatagcaactgcttgtttaagtcctcccattggacaacgaccttgaagtagagggtcaaccaatttgataaagttcttacg |
49265320 |
T |
|
| Q |
374 |
gtttttaagaacacttttgacctgcacac |
402 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
49265321 |
gtttttaagaacacttttgacctgcacac |
49265349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University