View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19971_low_23 (Length: 393)
Name: NF19971_low_23
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19971_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 139 - 378
Target Start/End: Original strand, 42210425 - 42210669
Alignment:
| Q |
139 |
taatacgtcaccttttcctataaactaagttacgatctcttgatcaagaaatcaatgattgatattatatgcacctaacaaataataattgattgatgcg |
238 |
Q |
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| T |
42210425 |
taatgcgtcaccttttactataaactaagttacgatctcttgatcaagaaatcaatgattgatattatatacacctaacaaataataattgattgatgcc |
42210524 |
T |
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| Q |
239 |
ttcaaatatgactgctagtttttccgctttaacatgtattcactttaaaggagtcaaattagtt-----acttgtcgattgtgtgttgcattttctttta |
333 |
Q |
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| T |
42210525 |
ttcaaatatgactactagtttttccgctttaacatgtattcactttaaaggagtcaaattagttacttaacttgtcgattgtgtgttgcattttctttta |
42210624 |
T |
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| Q |
334 |
tccttatttggagacagaatagaaaaagaaaaccgacgttctgtg |
378 |
Q |
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| T |
42210625 |
tccttatttggagacagaatagaaaaagaaaaccgacgttctgtg |
42210669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 42210101 - 42210247
Alignment:
| Q |
18 |
caatgtgttttaacaacttatattcattaaacacaatcacacacatatttaagttgtgt-----------tgtttttgaaattttattttcaagagatga |
106 |
Q |
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| T |
42210101 |
caatgtgttttaacaacttatattcattaaacacaatcacacacatatttaagttgtgtatcatcagtattgtttttgaaattttattttcaagagatga |
42210200 |
T |
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| Q |
107 |
ttatctattttcacctttctctataaactaactaatacgtcaccttt |
153 |
Q |
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| T |
42210201 |
ttatctattttcacctttctcaataaactaactaatacgtcaccttt |
42210247 |
T |
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