View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19971_low_26 (Length: 378)
Name: NF19971_low_26
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19971_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 15 - 363
Target Start/End: Original strand, 27998440 - 27998788
Alignment:
| Q |
15 |
tatgagtatggacctgtgttaagagttttaatcatttgtagtgcatgatcatgtatacaacaaagataaagtaagcaatccttcatccttgtcaattttt |
114 |
Q |
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| T |
27998440 |
tatgagtatggacctgtgttaagagttttaatcatttgtagtgcatgatcatgtatagaacaaagataaagtaagcaatccttcatccttgtcaattttt |
27998539 |
T |
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| Q |
115 |
ctcatgcttaaaaatatagtttcaagatttcattacaattttatagttctagcttaacctacatgcttaaaattaatttggagtggattttatagatgat |
214 |
Q |
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| T |
27998540 |
ctcatccttaaaaatatagtttcaagatttcattacaattttatagttctagcttaacctacatgcttaaaattaatttggagtggattttatagatgat |
27998639 |
T |
|
| Q |
215 |
tatgttatgatcacattttgcactaatataagtaaattgaatggttagcatcaacacagttctttccaccctttaactaaattgagcaagaatgttaaaa |
314 |
Q |
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| T |
27998640 |
tatgttatgatcacattttgcactaatataagtaaattgaatggttagcatcaacacagttctttccaccctttaactaaattgagcaagaatgttgaaa |
27998739 |
T |
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| Q |
315 |
aatcattgctctttataggtttgacttccaaaaatctctatcagtttca |
363 |
Q |
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| T |
27998740 |
aatcattgctctttataggtttgacttccaaaaatctctatcagtttca |
27998788 |
T |
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Back To:
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Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 4532436 - 4532369
Alignment:
| Q |
296 |
ttgagcaagaatgttaaaaaatcattgctctttataggtttgacttccaaaaatctctatcagtttca |
363 |
Q |
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| T |
4532436 |
ttgagcaagaatgttgaaaaatcattgctctttataggtttgacttccaaaaatctctatcagtttca |
4532369 |
T |
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