View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19971_low_29 (Length: 355)
Name: NF19971_low_29
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19971_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 21 - 268
Target Start/End: Complemental strand, 31828471 - 31828224
Alignment:
| Q |
21 |
gggatcagatattaatatagatgtcaaagctatgccaagcataattgaggatcctgcnnnnnnnnttatagattagtataaaataggtagtagaagacat |
120 |
Q |
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| T |
31828471 |
gggatcagatattagtatagatgtcaaagctatgccaagcataattgaggatcctgcaaaaaaaattatagattagtataaaataggtagtagaagacat |
31828372 |
T |
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| Q |
121 |
caaagaagggaagcctgaaaaagaaatcttacccacataatcaacataggcacttatatcttcctcactttttgcaatattattaaaattctttacctga |
220 |
Q |
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| T |
31828371 |
caaagaagggaagcctgaaaaagaaatcttacccacataatcagcataggcacttatatcttcctcactttttgcaatattattaaaatcctttacctga |
31828272 |
T |
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| Q |
221 |
aaataaatatttcatatatgttttatttgaagttgttcaaatacttat |
268 |
Q |
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| T |
31828271 |
aaataaatatttcatatatgttttatttgaagttgttcaaatacttat |
31828224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 47 - 261
Target Start/End: Complemental strand, 32116879 - 32116667
Alignment:
| Q |
47 |
aagctatgccaagcataattgaggatcctgcnnnnnnnn-ttatagattagtataaaataggtagtagaagacatcaaagaagggaagcctgaaaaagaa |
145 |
Q |
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| T |
32116879 |
aagctatgccaagcatgattgaggatcctgctaaaaaaaattatagattagtataaaataggtagtagaagacatcaaagaagggaagcatgaaaaagaa |
32116780 |
T |
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| Q |
146 |
atcttacccacataatcaacataggcacttatatcttcctcactttttgcaatattattaaaattctttacctgaaaataaatatttcatatatgtttta |
245 |
Q |
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| T |
32116779 |
atcttacccagataatcagcataggcacttatatcttcctcactttttgcaa---aattaaaatcctttacttgaaattaaatatttcatataagtttta |
32116683 |
T |
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| Q |
246 |
tttgaagttgttcaaa |
261 |
Q |
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| T |
32116682 |
tcttaagttgtacaaa |
32116667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 230
Target Start/End: Complemental strand, 39160665 - 39160548
Alignment:
| Q |
109 |
agtagaagacatcaaagaagggaagcctgaaaaagaaatcttacccacataatcaacataggcacttatatcttcctcactttttgcaatattattaaaa |
208 |
Q |
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||||||||||||||||||| |||| ||||||| ||||||||||| |||||| || |||| || |||||||||||||| |||| ||||| |||| ||| |
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| T |
39160665 |
agtagaagacatcaaagaattgaagtctgaaaa-gaaatcttacctacataaccagcataagcgcttatatcttcctcgctttctgcaa---tattgaaa |
39160570 |
T |
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| Q |
209 |
ttctttacctgaaaataaatat |
230 |
Q |
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| T |
39160569 |
tcctctacctgaaaataaatat |
39160548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 2606003 - 2605947
Alignment:
| Q |
145 |
aatcttacccacataatcaacataggcacttatatcttcctcactttttgcaatatt |
201 |
Q |
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|||||||||||||||| | |||| |||||||| || ||||| |||||||||||||| |
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| T |
2606003 |
aatcttacccacataacctgcataagcacttatgtcctcctctctttttgcaatatt |
2605947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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