View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19971_low_31 (Length: 344)
Name: NF19971_low_31
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19971_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 9 - 306
Target Start/End: Complemental strand, 43255602 - 43255301
Alignment:
| Q |
9 |
ttttctttgctcttgttggttgctgtaagttataattattaccnnnnnnnctcaaccaccttttcttcactttcttgtcttggcatcctgtgagcatgtt |
108 |
Q |
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| T |
43255602 |
ttttctttgctcttgttggttgttgtaagttataattattaccaaaaaaactcaaccaccttttcttcactttcttgtcttagcatcctgtgagcatgtt |
43255503 |
T |
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| Q |
109 |
tcatgatatggccttgtaagaaatgacatttacaagaactagaataattcagcatctttgtgtgttaacttctttgttgcaccccttccttaatggaagt |
208 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43255502 |
tcatgatgtggccttgtaagaaatgacatttacaagaactagaataattcagcatctttgtgtgttaacttctttgttgcaccccttccttaatggaagt |
43255403 |
T |
|
| Q |
209 |
tttccctttctcatgaaaggttccttttgttacttgcttgcccatcccaatccaaattccatcctccttacc----atgtcaccaccatcacatcttttg |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43255402 |
tttccctttctcatgaaaggttccttttgttacttgcttgcccctcccaatccaaattccatcctccttaccatatatgtcaccaccatcacatcttttg |
43255303 |
T |
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| Q |
305 |
ct |
306 |
Q |
| |
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|| |
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| T |
43255302 |
ct |
43255301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 9 - 189
Target Start/End: Complemental strand, 43258868 - 43258688
Alignment:
| Q |
9 |
ttttctttgctcttgttggttgctgtaagttataattattaccnnnnnnnctcaaccaccttttcttcactttcttgtcttggcatcctgtgagcatgtt |
108 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
43258868 |
ttttctttgctcttgttggttgttgtaagttataattattaccaaaaaaactcaaccaccttttcttcactttcttgtcttagcatcttgtgagcatgtt |
43258769 |
T |
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| Q |
109 |
tcatgatatggccttgtaagaaatgacatttacaagaactagaataattcagcatctttgtgtgttaacttctttgttgca |
189 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43258768 |
tcatgatgtggccttgtaagaaatgacatttacaagaactagaaatattcagcatctttgtgtgttaacttctttgttgca |
43258688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 43226066 - 43226006
Alignment:
| Q |
127 |
agaaatgacatttacaagaactagaataattcagcatctttgtgtgttaacttctttgttgca |
189 |
Q |
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||||||||||| |||||||||||||| |||| | |||| |||||||||||||||||||||| |
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| T |
43226066 |
agaaatgacatgtacaagaactagaaatattcggtatct--gtgtgttaacttctttgttgca |
43226006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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