View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19971_low_34 (Length: 330)
Name: NF19971_low_34
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19971_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 8789913 - 8790194
Alignment:
| Q |
18 |
aaacctggcacatggttttcagcactgagggtgagtgttctcatgcatttcctctctattatttcttttacattcactattcatcacaaggtcttaaatt |
117 |
Q |
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| T |
8789913 |
aaacctggcacatggttttcagcactgagggtgagtgttctcatgcatttcctctctattatttcttttacattcactattcatcacaaggtcttaaatt |
8790012 |
T |
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| Q |
118 |
acggttgcatcgcaatttgttagagtagaaaatccgattctaaaggattttgataaataaaaacacaaggacacaacaattgatcacaaagttcggtcaa |
217 |
Q |
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| T |
8790013 |
acggttgcatcgcaatttgttagagtagaaaatccgattctaaaggattttgataaataaaaacacaaggacacaacaattgatcacaaagttcggtcaa |
8790112 |
T |
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| Q |
218 |
ttgtgactttgtctctgacaccagaatgactggtgtagttttctagtattatgcattgaattagggtaacacagtacaaaac |
299 |
Q |
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| T |
8790113 |
ttgtgactttgtctctgacaccagaatgactggtgtagttttctagtattatgcattgaattagggtaacacagtacaaaac |
8790194 |
T |
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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 170 - 262
Target Start/End: Original strand, 4918230 - 4918322
Alignment:
| Q |
170 |
ataaataaaaacacaaggacacaacaattgatcacaaagttcggtcaattgtgactttgtctctgacaccagaatgactggtgtagttttcta |
262 |
Q |
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| T |
4918230 |
ataaaaaaacacacaagaacacaacaattgatcacagagttcggccaattgtgcatatatctctgacaatagatagactgttgtagttttcta |
4918322 |
T |
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