View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19971_low_36 (Length: 322)
Name: NF19971_low_36
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19971_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 15 - 307
Target Start/End: Original strand, 19260001 - 19260293
Alignment:
| Q |
15 |
atgaagaagacgaaggcattaatatcttcaacttcactccgaaaaataactcatatacaaagcctaaaacaaacaacttagaaaaaggagagtcttcaaa |
114 |
Q |
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| T |
19260001 |
atgaagaagacgaaggcattaatatcttcaacttcactccgaaaaataactcatatacaaagcctaaaacaaacaacttagaaaaaggagagtcttcaaa |
19260100 |
T |
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| Q |
115 |
ttcaagtatcactccattcgtttgcgaaatctgcacggacacgaaaacaatgaaggatgctttctacatcagcggttgctctcacgcttattgctccgat |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
19260101 |
ttcaagtatcactccattcgtttgcgaaatctgcacggacacgaaaacaatgaaggatgctttctacatcagcggttgctcccacgcttattgctccgat |
19260200 |
T |
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| Q |
215 |
tgtgtggtcaaatacatcaattcaaaacttgaagataacatcgtcaatattcggtgtcctgtactagagtgcgaaggtttgttggatccacag |
307 |
Q |
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| T |
19260201 |
tgtgtggtaaaatacatcaattccaaacttgaagataacattgtcaatattcagtgtcctgtactagattgcgaaggtttgttggatccacag |
19260293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 15 - 274
Target Start/End: Original strand, 19270191 - 19270450
Alignment:
| Q |
15 |
atgaagaagacgaaggcattaatatcttcaacttcactccgaaaaataactcatatacaaagcctaaaacaaacaacttagaaaaaggagagtcttcaaa |
114 |
Q |
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| T |
19270191 |
atgaagaagatgacgatattaagatcatcaatttcattccaaaaaataccccttatggaaagcgtaaaagaaacaagtttgacaaaggagagtcttcaaa |
19270290 |
T |
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| Q |
115 |
ttcaagtatcactccattcgtttgcgaaatctgcacggacacgaaaacaatgaaggatgctttctacatcagcggttgctctcacgcttattgctccgat |
214 |
Q |
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| T |
19270291 |
ttcaagtatcactccattcgtttgcgaaatctgcacggacactaaaacaatgaaggacgctatttacatcagcggttgctctcatgcttattgctcggat |
19270390 |
T |
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| Q |
215 |
tgtgtggtcaaatacatcaattcaaaacttgaagataacatcgtcaatattcggtgtcct |
274 |
Q |
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| T |
19270391 |
tgtgtggcatcatacataggttccaaacttgaagataacatcgttaatattcggtgtcct |
19270450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 15 - 274
Target Start/End: Original strand, 19314479 - 19314738
Alignment:
| Q |
15 |
atgaagaagacgaaggcattaatatcttcaacttcactccgaaaaataactcatatacaaagcctaaaacaaacaacttagaaaaaggagagtcttcaaa |
114 |
Q |
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||||||||||||||| | |||| ||| ||| |||| |||||||| || | | | ||||| | ||||| ||||||| | |||||||||||||||||||| |
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| T |
19314479 |
atgaagaagacgaagacgttaagatcatcagtttcattccgaaaactatcccttccacaaaacgtaaaagaaacaacattgaaaaaggagagtcttcaaa |
19314578 |
T |
|
| Q |
115 |
ttcaagtatcactccattcgtttgcgaaatctgcacggacacgaaaacaatgaaggatgctttctacatcagcggttgctctcacgcttattgctccgat |
214 |
Q |
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| T |
19314579 |
ctcaaataacacccctttcgtttgtgaaatctgtactgacactaaaacaatgaaggatgctttctacatcagcggttgttctcacgtatattgctctgat |
19314678 |
T |
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| Q |
215 |
tgtgtggtcaaatacatcaattcaaaacttgaagataacatcgtcaatattcggtgtcct |
274 |
Q |
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| T |
19314679 |
tgcgtggccatgtacattggttccaagcttgaagaaaacatcgtcaaaattcagtgtcct |
19314738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 274
Target Start/End: Original strand, 19291665 - 19291781
Alignment:
| Q |
158 |
aaaacaatgaaggatgctttctacatcagcggttgctctcacgcttattgctccgattgtgtggtcaaatacatcaattcaaaacttgaagataacatcg |
257 |
Q |
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||||||||||||| ||||||||| ||| | || |||||||||| |||| ||| ||||| ||| ||||||||| ||| || |||||||||||||| | |
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| T |
19291665 |
aaaacaatgaagggtgctttctatatcggtggcagctctcacgcatattcctctgattgcatggcgaaatacatcggttccaagcttgaagataacatgg |
19291764 |
T |
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| Q |
258 |
tcaatattcggtgtcct |
274 |
Q |
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| T |
19291765 |
tcaatattcggtgtcct |
19291781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 274
Target Start/End: Original strand, 19254603 - 19254742
Alignment:
| Q |
135 |
tttgcgaaatctgcacggacacgaaaacaatgaaggatgctttctacatcagcggttgctctcacgcttattgctccgattgtgtggtcaaatacatcaa |
234 |
Q |
| |
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|||| ||||||||||| || | ||||||||||||||||| ||| | ||||| |||||||||||| | |||||||| |||||||||| | |||||| |
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| T |
19254603 |
tttgtgaaatctgcacagatatgaaaacaatgaaggatgttttttgcatcaatggttgctctcactcgtattgctctgattgtgtggcgatgtacatcgg |
19254702 |
T |
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| Q |
235 |
ttcaaaacttgaagataacatcgtcaatattcggtgtcct |
274 |
Q |
| |
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||| || || ||||||| ||| |||| |||||||||||| |
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| T |
19254703 |
ttccaagctcaaagataatatcatcaacattcggtgtcct |
19254742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 79 - 276
Target Start/End: Complemental strand, 13207165 - 13206967
Alignment:
| Q |
79 |
taaaacaaacaacttagaaaaaggagagtcttcaaattcaagtatcactccattcgtttgcgaaatctgcacggacacgaaaacaatgaaggatgctttc |
178 |
Q |
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||||| ||||||| | |||||| |||||||||||||||||| || ||||| || ||||||||||||||||| || || |||| ||||||||||| |||| |
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| T |
13207165 |
taaaagaaacaacatcgaaaaaagagagtcttcaaattcaaataacactcagttggtttgcgaaatctgcaccgaaactaaaagaatgaaggatgttttc |
13207066 |
T |
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| Q |
179 |
tacatcagcggttgctctcacgcttattgctccgattgtgtggtcaaatacat-caattcaaaacttgaagataacatcgtcaatattcggtgtcctgt |
276 |
Q |
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||||||||| |||||||||| || |||||||| ||||| | | |||||||| | |||| || ||| ||||||||||| |||| ||||||||||||| |
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| T |
13207065 |
tacatcagctgttgctctcatgcatattgctctgattgcatagcaaaatacatccgattccaagcttcaagataacatcatcaacgttcggtgtcctgt |
13206967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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