View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19971_low_40 (Length: 302)
Name: NF19971_low_40
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19971_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 49 - 283
Target Start/End: Original strand, 12748595 - 12748829
Alignment:
| Q |
49 |
tattatttattagtaactaggcataagtatttatatacaaaactgtaacaaactttataacaaactagttatcttcggtttagttaaccaacaagtttac |
148 |
Q |
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| T |
12748595 |
tattatttattagtaactaggcataagtatttatatacaaaactgttacaaactttataacaaactagttatcttcggtttacttaaccaacaagtttac |
12748694 |
T |
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| Q |
149 |
ccttgtttttcctcaacttctaactaactgaaaatataaactctaactaactgaatttattaaactcgtaatacacctcctaattcattagttagaggtt |
248 |
Q |
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| T |
12748695 |
ccttgttttccctcaacttctaactaactcaaaatataaactctaactaactgaatttattaaactcctaatacacctcctaattcattatttagaggtt |
12748794 |
T |
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| Q |
249 |
ttaaccatttataacttgtttctcaagtattcaaa |
283 |
Q |
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| T |
12748795 |
ttaaccatttataacttgtttctcaagtattcaaa |
12748829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 12748181 - 12748237
Alignment:
| Q |
1 |
aagaactgaaaaattaactttattaacttgagaatataatacttctcatattattta |
57 |
Q |
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| T |
12748181 |
aagaactgaaaaataaactttattaacttgagaatataatacttcttatattattta |
12748237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 10992076 - 10991878
Alignment:
| Q |
16 |
aactttattaacttgagaatataatacttctcatattatttattagtaactaggcataagtatttatatac-aaaactgtaacaaactttataacaaact |
114 |
Q |
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| T |
10992076 |
aactttattgacttgagaatataatgcttctcatattattaatcagcaactaggcataggtatttatatacaaaaactgtaaaaaaaactattacaaact |
10991977 |
T |
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| Q |
115 |
agttatcttcggtttagttaaccaacaagtttacccttgtttttcctcaacttctaactaactgaaaatataaa--ctctaactaactgaatttattaaa |
212 |
Q |
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| T |
10991976 |
agttatcttaagtttacttaaccgacaagttaacccttgttttt-ctcgacttttaactaactcaaatgataaactctctaactaactgaatttattaaa |
10991878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 250
Target Start/End: Complemental strand, 17342873 - 17342840
Alignment:
| Q |
217 |
taatacacctcctaattcattagttagaggtttt |
250 |
Q |
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| T |
17342873 |
taatacacctcctaattcattagttagaagtttt |
17342840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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