View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19971_low_42 (Length: 295)
Name: NF19971_low_42
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19971_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 36942972 - 36942693
Alignment:
| Q |
1 |
caatctcacagatttcacatctcatttcacatttacaatagattcacagaatagacaaatgtatggagatgggattgcattcttcctagccccttatggt |
100 |
Q |
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| T |
36942972 |
caatctcacagatttcacatctcatttcacatttacaatagattcacagaatagacaaatgtatggagatgggattgcattcttcctagccccttatggt |
36942873 |
T |
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| Q |
101 |
tcaaaaaagcctaatgcaacaaaaggtggttctatgggtctaacacttgataaccaaaggttgaactcaactgataatccatttgttgctgtggagtttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36942872 |
tcaaaaaagcctaatgcaacaaaaggtggttctatgggtctaacacttgataatcaaaggttgaactcaactgataatccatttgttgctgtggagtttg |
36942773 |
T |
|
| Q |
201 |
atatctatcggaatcattgggatccacctcttgaacatgccggaatcgacatcaactccatgctgtctgttgctaatgtt |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36942772 |
atatctatcggaatcattgggatccacctcttgaacatgccggaatcgacatcaactctatgctgtctgttgctaatgtt |
36942693 |
T |
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