View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19971_low_44 (Length: 292)
Name: NF19971_low_44
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19971_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 21 - 273
Target Start/End: Complemental strand, 4134314 - 4134062
Alignment:
| Q |
21 |
caagcgccaattccaaaccgcgaaatttcaaaatttgatatatcttttaacattatcttgtataactcttttgttggattttgatgaattcaaacccaaa |
120 |
Q |
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| T |
4134314 |
caagcgccaattccaaaccgcgaaatttcaaaatttgatatatcttttaacattatcttgtataactcttttgttggattttgatgaattcaaacccaaa |
4134215 |
T |
|
| Q |
121 |
ccttcaaagcatcaattctcaggtacccttcttcatattcctctaatctaacctcttttcattattcatcttctcattttctttcgttctatcttttagg |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4134214 |
ccttcaaagcatcaattctcaggtacccttcttcatattcctctaatctaacctcttttcattattcatcttctcattttctttcgttctatcttttagg |
4134115 |
T |
|
| Q |
221 |
ttccgagttcgatgtcgtcgccctcatgcccttctggtttgtatccatacctt |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4134114 |
ttccgagttcgatgtcgtcgccctcatgcccttctggtttgtatccatacctt |
4134062 |
T |
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