View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19971_low_46 (Length: 279)

Name: NF19971_low_46
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19971_low_46
NF19971_low_46
[»] chr4 (3 HSPs)
chr4 (1-187)||(69510-69696)
chr4 (10-69)||(49499445-49499504)
chr4 (26-74)||(69732-69780)
[»] chr3 (8 HSPs)
chr3 (1-187)||(17542494-17542680)
chr3 (9-169)||(9104425-9104584)
chr3 (11-69)||(11937635-11937693)
chr3 (7-69)||(16975663-16975725)
chr3 (5-69)||(5004518-5004582)
chr3 (26-74)||(17542446-17542494)
chr3 (24-143)||(9082969-9083081)
chr3 (24-143)||(8731082-8731194)
[»] chr2 (5 HSPs)
chr2 (1-187)||(44788731-44788916)
chr2 (50-146)||(1193862-1193956)
chr2 (7-141)||(29270919-29271049)
chr2 (26-75)||(44788951-44789000)
chr2 (7-59)||(28266912-28266964)
[»] chr1 (4 HSPs)
chr1 (1-187)||(6836127-6836314)
chr1 (4-135)||(33007484-33007614)
chr1 (8-69)||(35761806-35761867)
chr1 (8-69)||(37666979-37667040)
[»] chr5 (3 HSPs)
chr5 (19-187)||(6308882-6309049)
chr5 (10-69)||(4557762-4557821)
chr5 (26-74)||(6309136-6309184)
[»] chr7 (6 HSPs)
chr7 (7-187)||(9993512-9993697)
chr7 (7-187)||(11036147-11036334)
chr7 (92-168)||(3691753-3691829)
chr7 (10-69)||(21491252-21491311)
chr7 (7-63)||(22078025-22078081)
chr7 (10-69)||(18367086-18367145)
[»] chr8 (8 HSPs)
chr8 (7-176)||(40841278-40841444)
chr8 (75-187)||(22816217-22816329)
chr8 (10-125)||(35840596-35840710)
chr8 (116-184)||(35839341-35839409)
chr8 (43-97)||(22816162-22816216)
chr8 (26-75)||(22635773-22635822)
chr8 (26-75)||(3189180-3189229)
chr8 (26-75)||(22816066-22816115)
[»] scaffold0013 (1 HSPs)
scaffold0013 (1-187)||(242874-243047)
[»] chr6 (3 HSPs)
chr6 (7-69)||(32450018-32450080)
chr6 (5-69)||(10751358-10751422)
chr6 (18-59)||(26182452-26182493)
[»] scaffold0413 (1 HSPs)
scaffold0413 (5-69)||(9212-9276)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 7e-92; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 69696 - 69510
Alignment:
Q  1 tagtaacccgccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccacacagaaaataattatatatctcacaccaccatgaacat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  69696 tagtaacccgccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccacacagaaaataattatatatctcacatcaccatgaacat 69597  T
Q  101 gataaaaaataatcttttcaataagactcacattttcatctcttttcattttccttaattaatcaaaatttaacatgtccttctcag 187  Q
    ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  69596 gatcaaaaacaatcttttcaataagactcacattttcatctcttttcattttccttaattaatcaaaatctaacatgtccttctcag 69510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 49499504 - 49499445
Alignment:
Q  10 gccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccacacagaaa 69  Q
    ||||||||||||||| |||||||||||||||   |||||||| |||||||||||||||||    
T  49499504 gccacttaggcacaaaaatgcaatatgatatcatcccgccactaaggcaccacacagaaa 49499445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 69780 - 69732
Alignment:
Q  26 aatgcaatatgatatttacccgccacaaaggcaccacacagaaaataat 74  Q
    |||||||||||||||| ||||||||| |||||||||||||||| |||||    
T  69780 aatgcaatatgatattaacccgccactaaggcaccacacagaatataat 69732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 17542494 - 17542680
Alignment:
Q  1 tagtaacccgccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccacacagaaaataattatatatctcacaccaccatgaacat 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  17542494 tagtaacccgccacttagacacaacaatgcaatatgatatttacctgccacaaaggcaccacacagaaaataattatatatctaacatcaccatgaacat 17542593  T
Q  101 gataaaaaataatcttttcaataagactcacattttcatctcttttcattttccttaattaatcaaaatttaacatgtccttctcag 187  Q
    ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17542594 gatcaaaaacaatcttttcaataagactcacattttcatctcttttcattttccttaattaatcaaaatctaacatgtccttctcag 17542680  T

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Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 9 - 169
Target Start/End: Complemental strand, 9104584 - 9104425
Alignment:
Q  9 cgccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccacacagaaaataattatatatctcacaccaccatgaacatgataaaaa 108  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||  |||    
T  9104584 cgccacttaggcacaacaaagcaatatgatatttacctgccacaaaggcaccacacagaaa-taattatatatctcacatcaccaagaacatgatccaaa 9104486  T
Q  109 ataatcttttcaataagactcacattttcatctcttttcattttccttaattaatcaaaat 169  Q
    ||| |||||||||| | |||||||||| ||||||||||||||||| ||| |||||||||||    
T  9104485 atagtcttttcaatcaaactcacatttccatctcttttcattttcattagttaatcaaaat 9104425  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 11937635 - 11937693
Alignment:
Q  11 ccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccacacagaaa 69  Q
    |||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||    
T  11937635 ccacttaggcacaacaatgcaatatgatattatcccgccactaaggcaccacacagaaa 11937693  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 16975725 - 16975663
Alignment:
Q  7 cccgccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccacacagaaa 69  Q
    |||||||||||||||||| ||||||||||||| ||  |||||||| ||||||||||| |||||    
T  16975725 cccgccacttaggcacaataatgcaatatgatgttatcccgccactaaggcaccacaaagaaa 16975663  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 5004518 - 5004582
Alignment:
Q  5 aacccgccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccacacagaaa 69  Q
    ||||||||||| |||||||| ||||||||||||| ||  |||||||| ||||||||||| |||||    
T  5004518 aacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccacaaagaaa 5004582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 17542446 - 17542494
Alignment:
Q  26 aatgcaatatgatatttacccgccacaaaggcaccacacagaaaataat 74  Q
    |||||||||||||||| ||||||||| |||||||||||||||| |||||    
T  17542446 aatgcaatatgatattaacccgccactaaggcaccacacagaatataat 17542494  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 9083081 - 9082969
Alignment:
Q  24 acaatgcaatatgatatttacccgccacaaaggcaccacacagaaaataattatatatctcacaccaccatgaacatgataaaaaataatcttttcaata 123  Q
    |||| ||||||||||| | ||||||| | |||||||||||     ||||||||||||||| |||  || ||||||| |||||||| ||||||||| ||||    
T  9083081 acaaagcaatatgatactaacccgcccctaaggcaccaca-----aataattatatatcttacataac-atgaacacgataaaaa-taatctttttaata 9082989  T
Q  124 agactcacattttcatctct 143  Q
    | ||||| ||||||||||||    
T  9082988 aaactcatattttcatctct 9082969  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 8731194 - 8731082
Alignment:
Q  24 acaatgcaatatgatatttacccgccacaaaggcaccacacagaaaataattatatatctcacaccaccatgaacatgataaaaaataatcttttcaata 123  Q
    |||| ||||||||||| | ||||||| | |||||||||||     ||||||||||||||| |||  || ||||||| |||| ||| ||||||||| ||||    
T  8731194 acaaagcaatatgatactaacccgcccctaaggcaccaca-----aataattatatatcttacataac-atgaacacgatacaaa-taatctttttaata 8731102  T
Q  124 agactcacattttcatctct 143  Q
    | ||||| ||||||||||||    
T  8731101 aaactcatattttcatctct 8731082  T

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Target: chr2 (Bit Score: 151; Significance: 6e-80; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 44788916 - 44788731
Alignment:
Q  1 tagtaacccgccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccacacagaaaataattatatatctcacaccaccatgaacat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||| ||||||||||||    
T  44788916 tagtaacccgccacttaggcacaacaatgcaatatgatatttacccgccacaaag-caccacacaacaaataattatatatctcacatcaccatgaacat 44788818  T
Q  101 gataaaaaataatcttttcaataagactcacattttcatctcttttcattttccttaattaatcaaaatttaacatgtccttctcag 187  Q
    ||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  44788817 gatcaaaaacaatcttttcaataagactcacattttcatctcttttcatttttcttaattaatcaaaatctaacatgtccttctcag 44788731  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 50 - 146
Target Start/End: Complemental strand, 1193956 - 1193862
Alignment:
Q  50 acaaaggcaccacacagaaaataattatatatctcacaccaccatgaacatgataaaaaataatcttttcaataagactcacattttcatctctttt 146  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||| | ||| ||||||||||||||  |||| |||||||||||||||    
T  1193956 acaaaggcaccacacagaaa-taattatatatctcacatcaccatgaacatgatcataaacaatcttttcaataa-tctcatattttcatctctttt 1193862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 141
Target Start/End: Complemental strand, 29271049 - 29270919
Alignment:
Q  7 cccgccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccacacagaaaataattatatatctcacaccaccatgaacatgataaa 106  Q
    |||| |||||||||||  ||| ||||||||||||| |||| |||| ||||||||||| |   |||||  ||||||||||||||  |||||||||||| ||    
T  29271049 cccgtcacttaggcaccccaaagcaatatgatattaacccaccactaaggcaccacaga---aataac-atatatctcacaccgtcatgaacatgatcaa 29270954  T
Q  107 aaataatcttttcaataagactcacattttcatct 141  Q
    | | ||| |||||||||| |||||||||| |||||    
T  29270953 agacaatattttcaataaaactcacatttccatct 29270919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 44789000 - 44788951
Alignment:
Q  26 aatgcaatatgatatttacccgccacaaaggcaccacacagaaaataatt 75  Q
    ||||||||||||||||  |||||||| |||||||||||||||| ||||||    
T  44789000 aatgcaatatgatattagcccgccactaaggcaccacacagaatataatt 44788951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 28266912 - 28266964
Alignment:
Q  7 cccgccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcac 59  Q
    ||||||||  |||||||||||||||||||||||||   ||||||| |||||||    
T  28266912 cccgccacacaggcacaacaatgcaatatgatattatgccgccactaaggcac 28266964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 6836314 - 6836127
Alignment:
Q  1 tagtaacccgccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccacacagaaaataattatatatctcacaccaccatgaacat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| ||    
T  6836314 tagtaacccgccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccacatagaaaatatttatatatctcacatcaccatgaatat 6836215  T
Q  101 gataaaaaataatcttttcaataagactcacattttcatctctttt-cattttccttaattaatcaaaatttaacatgtccttctcag 187  Q
    ||| ||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||    
T  6836214 gatcaaaaacaatcttttcaataagactcacattttcatctcttttcctttttccttaattaatcaaaatctaacatgtccttctcag 6836127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 135
Target Start/End: Original strand, 33007484 - 33007614
Alignment:
Q  4 taacccgccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccacacagaaaataattatatatctcacaccaccatgaacatgat 103  Q
    |||||||| ||| || |||  ||||||||||||||||||||| |||||||| |||| |||||  |||||||||||||||||| | |||||  ||||| ||    
T  33007484 taacccgcaactaagacactccaatgcaatatgatatttaccagccacaaaagcactacaca-caaataattatatatctcatatcaccaaaaacataat 33007582  T
Q  104 aaaaaataatcttttcaataagactcacattt 135  Q
     ||  | ||  |||||||||| ||||||||||    
T  33007583 caatgacaacattttcaataaaactcacattt 33007614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 35761806 - 35761867
Alignment:
Q  8 ccgccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccacacagaaa 69  Q
    |||||||||||||||||||||||| |||||| ||  || ||||| ||||||||||| |||||    
T  35761806 ccgccacttaggcacaacaatgcagtatgatgttatcctgccactaaggcaccacaaagaaa 35761867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 37666979 - 37667040
Alignment:
Q  8 ccgccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccacacagaaa 69  Q
    |||||||| |||||||| ||||||||||||| ||  |||||||| ||||||||||| |||||    
T  37666979 ccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccacaaagaaa 37667040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 6309049 - 6308882
Alignment:
Q  19 gcacaacaatgcaatatgatatttacccgccacaaaggcaccacacagaaaataattatatatctcacaccaccatgaacatgataaaaaataatctttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||| ||||||||    
T  6309049 gcacaacaatgcaatatgatatttacccgccacaaaggcaccacacagaaaataattatatatctcacatcaccatgaacatgat-caaaacaatctttt 6308951  T
Q  119 caataagactcacattttcatctcttttcattttccttaattaatcaaaatttaacatgtccttctcag 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6308950 caataagactcacattttcatctcttttcattttccttaattaatcaaaatctaacatgtccttctcag 6308882  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 4557762 - 4557821
Alignment:
Q  10 gccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccacacagaaa 69  Q
    ||||||||||||||||||||||||||||||||  | |||||| |||||||||||||||||    
T  4557762 gccacttaggcacaacaatgcaatatgatattatcgcgccactaaggcaccacacagaaa 4557821  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 6309184 - 6309136
Alignment:
Q  26 aatgcaatatgatatttacccgccacaaaggcaccacacagaaaataat 74  Q
    |||||||||||||||| ||||||||| |||||||||||||||| |||||    
T  6309184 aatgcaatatgatattaacccgccactaaggcaccacacagaatataat 6309136  T

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Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 7 - 187
Target Start/End: Complemental strand, 9993697 - 9993512
Alignment:
Q  7 cccgccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccacacagaaaataattatatatctcacaccaccat------gaacat 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||      ||||||    
T  9993697 cccgccacttaggcacaacaatgcaatatgatatttacccaccacaaaggcaccacacagaaa-taattatatatctcacatcaccatcaccatgaacat 9993599  T
Q  101 gataaaaaataatcttttcaataagactcacattttcatctcttttcattttccttaattaatcaaaatttaacatgtccttctcag 187  Q
    ||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  9993598 gatcaaaaacaatcttttcaataaaactcacattttcatctcttttcattttccttaattaatcaaaatctaacatgtctttctcag 9993512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 7 - 187
Target Start/End: Original strand, 11036147 - 11036334
Alignment:
Q  7 cccgccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccacacagaaaataattatatatctcacaccaccatgaacatgataaa 106  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||| ||||||||||||| ||||||||||||||| ||    
T  11036147 cccgccacttaggcacaacaatgcaatatgatatttactcgccac-aaggcaccacacag-aaataactatatatctcacatcaccatgaacatgatcaa 11036244  T
Q  107 aaataatcttttcaat---------aagactcacattttcatctcttttcattttccttaattaatcaaaatttaacatgtccttctcag 187  Q
    ||| ||||||||||||         || |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  11036245 aaacaatcttttcaatgaaacattgaaaactcacattttcatctcttttcattttccttaattaatcaaaatctaacatgtctttctcag 11036334  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 3691829 - 3691753
Alignment:
Q  92 catgaacatgataaaaaataatcttttcaataagactcacattttcatctcttttcattttccttaattaatcaaaa 168  Q
    |||||||||||| ||||| |||||||||||||| ||||||| ||||||||||||||  |||||||||||||| ||||    
T  3691829 catgaacatgatcaaaaacaatcttttcaataaaactcacactttcatctcttttccctttccttaattaataaaaa 3691753  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 21491252 - 21491311
Alignment:
Q  10 gccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccacacagaaa 69  Q
    ||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||    
T  21491252 gccacttaggcacaacaatgcaatatgatattctcccgccactaaggcaccacacagaaa 21491311  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 22078081 - 22078025
Alignment:
Q  7 cccgccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccaca 63  Q
    |||||||||||||||||||||||||||||||| ||  |||||||| |||||||||||    
T  22078081 cccgccacttaggcacaacaatgcaatatgatgttatcccgccactaaggcaccaca 22078025  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 18367086 - 18367145
Alignment:
Q  10 gccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccacacagaaa 69  Q
    |||||||||| |||||||||||||||||||||  || ||||| |||||||||||||||||    
T  18367086 gccacttagggacaacaatgcaatatgatattatcctgccactaaggcaccacacagaaa 18367145  T

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Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 7 - 176
Target Start/End: Original strand, 40841278 - 40841444
Alignment:
Q  7 cccgccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccacacagaaaataattatatatctcacaccaccatgaacatgataaa 106  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||| || || ||||||| ||||||||  ||||||| ||||| ||||||||| ||    
T  40841278 cccgcaacataggcacaacaatgcaatatgatatttacccgccacaaagacagcatacagaaa-taattata--tctcacatcaccaagaacatgatcaa 40841374  T
Q  107 aaataatcttttcaataagactcacattttcatctcttttcattttccttaattaatcaaaatttaacat 176  Q
    ||||| |||||||||| | |||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  40841375 aaatagtcttttcaatcaaactcacattttcatctcttttcattttccttagttaatcaaaatctaacat 40841444  T

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Target: chr8; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 75 - 187
Target Start/End: Original strand, 22816217 - 22816329
Alignment:
Q  75 tatatatctcacaccaccatgaacatgataaaaaataatcttttcaataagactcacattttcatctcttttcattttccttaattaatcaaaatttaac 174  Q
    ||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||    
T  22816217 tatatatctcacatcaccatgaacatgatcaaaaacaatcttttcaataagactcacattttcatctcttttcattttttttaattaatcaaaatctaac 22816316  T
Q  175 atgtccttctcag 187  Q
    |||||||||||||    
T  22816317 atgtccttctcag 22816329  T

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Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 10 - 125
Target Start/End: Complemental strand, 35840710 - 35840596
Alignment:
Q  10 gccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccacacagaaaataattatatatctcacaccaccatgaacatgataaaaaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||| ||| |||||    
T  35840710 gccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcacgacacag-aaataattatatatctcacatcaccatgaacacgatcaaaaa 35840612  T
Q  110 taatcttttcaataag 125  Q
     |||||||||||||||    
T  35840611 caatcttttcaataag 35840596  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 35839409 - 35839341
Alignment:
Q  116 tttcaataagactcacattttcatctcttttcattttccttaattaatcaaaatttaacatgtccttct 184  Q
    ||||||||| |||| ||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  35839409 tttcaataaaactcgcatttccatctcttttcattttccttaattaatcaaaatctaacatgtctttct 35839341  T

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Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 22816162 - 22816216
Alignment:
Q  43 acccgccacaaaggcaccacacagaaaataattatatatctcacaccaccatgaa 97  Q
    |||||||||  |||||||||||||||||||||||||||||||||| |||||||||    
T  22816162 acccgccacttaggcaccacacagaaaataattatatatctcacatcaccatgaa 22816216  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 22635773 - 22635822
Alignment:
Q  26 aatgcaatatgatatttacccgccacaaaggcaccacacagaaaataatt 75  Q
    |||||||||||||||| |||||||||  ||||||||||||||| ||||||    
T  22635773 aatgcaatatgatattaacccgccactgaggcaccacacagaatataatt 22635822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 3189180 - 3189229
Alignment:
Q  26 aatgcaatatgatatttacccgccacaaaggcaccacacagaaaataatt 75  Q
    |||||||||||||||| | |||||||  ||||||||||||||| ||||||    
T  3189180 aatgcaatatgatattaatccgccaccgaggcaccacacagaatataatt 3189229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 22816066 - 22816115
Alignment:
Q  26 aatgcaatatgatatttacccgccacaaaggcaccacacagaaaataatt 75  Q
    |||||| ||||||||| ||||||||| ||||||||||||| || ||||||    
T  22816066 aatgcagtatgatattaacccgccactaaggcaccacacataatataatt 22816115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 242874 - 243047
Alignment:
Q  1 tagtaacccgccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccacacagaaaataattatatatctcacaccaccatgaacat 100  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||           |||||    
T  242874 tagtaacctgccactaaggcacaacaatgcaatatgatatttacccgtcacaaaggcaccacaca-taaataattatatatctc-----------aacat 242961  T
Q  101 gataaaaaataatcttttcaataagactcacattttcatctcttttcattttccttaattaatcaaaatttaacatgtccttctcag 187  Q
    ||| ||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||    
T  242962 gatcaaaaacaatc-tttcaataaaactcacattttcatctcttttcattttccttaattagtcaaaatctaacatgtctttctcag 243047  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 32450018 - 32450080
Alignment:
Q  7 cccgccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccacacagaaa 69  Q
    |||||||||||||||||||||||||||||||| ||  |||||||| ||||||||||| |||||    
T  32450018 cccgccacttaggcacaacaatgcaatatgatgttatcccgccactaaggcaccacaaagaaa 32450080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 10751358 - 10751422
Alignment:
Q  5 aacccgccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccacacagaaa 69  Q
    ||||||||||| |||||||| ||||||||||||| ||  |||||||| ||||||||||| |||||    
T  10751358 aacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccacaaagaaa 10751422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 26182452 - 26182493
Alignment:
Q  18 ggcacaacaatgcaatatgatatttacccgccacaaaggcac 59  Q
    ||||||||||||||||||||||||  |||||||| |||||||    
T  26182452 ggcacaacaatgcaatatgatattatcccgccactaaggcac 26182493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 9276 - 9212
Alignment:
Q  5 aacccgccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccacacagaaa 69  Q
    ||||||||||| |||||||| ||||||||||||| ||  |||||||| ||||||||||| |||||    
T  9276 aacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccacaaagaaa 9212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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