View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19971_low_48 (Length: 267)
Name: NF19971_low_48
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19971_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 262
Target Start/End: Complemental strand, 1237589 - 1237340
Alignment:
| Q |
13 |
aaaatagcgccttgttcaaattctgctaagcaacaatgctatagcacgccactatttcacaatattttgtaataaagagcatatataaagagatttttgt |
112 |
Q |
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| T |
1237589 |
aaaatagcgccttgttcaaattctgctaagcaacaatgctatagcgcgccactatttcacaatattttgtactaaaaagcatatataaagagatttttgt |
1237490 |
T |
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| Q |
113 |
aaatctattataggttttctttcatattctgtgaatgttaatagaaatatgagctctctattaagatagatcacatactattttgtctaccctaagctag |
212 |
Q |
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|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1237489 |
aaatctattatatgttttcattcatattctgtgaatgttaatagaaatatgagctctctattaagatagatcacatactattttgtctaccctaagctag |
1237390 |
T |
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| Q |
213 |
ttagcatttccgttgactgtgccataacttctttgacctaagcagctctt |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1237389 |
ttagcatttccgttgactgtgccataacttctttgacctaagcagctctt |
1237340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 11 - 262
Target Start/End: Complemental strand, 41970347 - 41970083
Alignment:
| Q |
11 |
agaaaatagcgccttgttcaaattctgctaagcaacaatgctatagcacgccactatttcacaatattttgtaataaagagcatatata----------- |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
41970347 |
agaaaatagcgccttgttcaaattctgctaagcaacaatgctatagc--gccactatttcacaatattttgtactaaagagcatatatatatatatatat |
41970250 |
T |
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| Q |
100 |
---aagagatttttgtaaatctattataggttttctttcatattctgtgaatgttaatagaaatatgagctctctattaagatagatcacatactatttt |
196 |
Q |
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| T |
41970249 |
aaaaagggatttttgtaaatctattataggttttcattcatattctgtgaatgttaacagaaatatgagttctctattaagatagatcacatactatttt |
41970150 |
T |
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| Q |
197 |
gtctaccctaagctagttagcatttccgttgactgtgccataacttctttgacctaa-gcagctctt |
262 |
Q |
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| T |
41970149 |
gtccaccctaagctggttagcatttccgttagctgtgccataacttctttgacctaaggcagctctt |
41970083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 33534631 - 33534709
Alignment:
| Q |
11 |
agaaaatagcgccttgttcaaattctgctaagcaacaatgctatagca-cgccactatttcacaatattttgtaataaa |
88 |
Q |
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||||||||||| | ||||||||||||||| |||||| |||||||||| ||| | ||||| |||| |||||||| |||| |
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| T |
33534631 |
agaaaatagcggttggttcaaattctgctacgcaacagtgctatagcatcgctattatttgacaacattttgtattaaa |
33534709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 46937680 - 46937606
Alignment:
| Q |
12 |
gaaaatagcgccttgttcaaattctgctaagcaacaatgctatagcacgccactatttcacaatattttgtaataaa |
88 |
Q |
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|||||||||| |||||||||||| |||| |||||| || |||||| |||||||||||||||||||||||| |||| |
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| T |
46937680 |
gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagc--gccactatttcacaatattttgtactaaa |
46937606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 30530000 - 30530049
Alignment:
| Q |
8 |
cgaagaaaatagcgccttgttcaaattctgctaagcaacaatgctatagc |
57 |
Q |
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|||||||||||||| ||||||||||||||||| |||||| ||||||||| |
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| T |
30530000 |
cgaagaaaatagcggtttgttcaaattctgctacgcaacagtgctatagc |
30530049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 16866717 - 16866639
Alignment:
| Q |
11 |
agaaaatagcgccttgttcaaattctgctaagcaacaatgctatagca-cgccactatttcacaatattttgtaataaa |
88 |
Q |
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||||||||||| | ||||||||||||||| |||||| |||||||||| ||| | ||||| |||| |||||||| |||| |
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| T |
16866717 |
agaaaatagcggttggttcaaattctgctacgcaacagtgctatagcatcgctattatttgacaacattttgtattaaa |
16866639 |
T |
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