View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19971_low_49 (Length: 265)
Name: NF19971_low_49
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19971_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 54599590 - 54599836
Alignment:
| Q |
16 |
cctactcccctacacttacactctaacacctacaaactattaaaattatcaattttatccatttcaactctttcatatttagaatgagttcacctataca |
115 |
Q |
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| T |
54599590 |
cctactcccctacacttacactctaacacctacaaactattataattatcaattttatccatttcaactctttcatatttagaatgagttcacctataca |
54599689 |
T |
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| Q |
116 |
tgannnnnnnnn---ggaaaacttatatcaagttttttgatttggcataaataattgattgaggtaaatgaacatgtggcgagtgatcctaaaattaagg |
212 |
Q |
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| T |
54599690 |
tgattttttttttttgaaaaacttatatcaagttttttgatttggcataaatagttgattgaggtaaatgaacatgtggcgagtgatcctaaaattaagg |
54599789 |
T |
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| Q |
213 |
aaacttaaattttggcgagtaagttttggatttagtcttcttctctc |
259 |
Q |
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| T |
54599790 |
aaacttaaattgtggcgagtaagttttggatttagtcttcttttctc |
54599836 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 39773206 - 39773275
Alignment:
| Q |
155 |
tggcataa-ataattgattgaggtaaatgaacatgtggcgagtgatcctaaaattaaggaaacttaaatt |
223 |
Q |
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| T |
39773206 |
tggcataacataattggttgagaaaaatggacatgtggctagtgatcctaaaattaaggaagcttgaatt |
39773275 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 32848158 - 32848095
Alignment:
| Q |
152 |
atttggcataa-ataattgattgaggtaaatgaacatgtggcgagtgatcctaaaattaaggaa |
214 |
Q |
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| T |
32848158 |
atttggcataacatcattggttgaggtaaatgaacatgtggctcatgatcctaaaatcaaggaa |
32848095 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 6919358 - 6919416
Alignment:
| Q |
154 |
ttggcataa-ataattgattgaggtaaatgaacatgtggcgagtgatcctaaaattaag |
211 |
Q |
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| T |
6919358 |
ttggcataacataattggttgaggcaaatggacatgtggctagtgatactaaaattaag |
6919416 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 34272277 - 34272339
Alignment:
| Q |
152 |
atttggcataa-ataattgattgaggtaaatgaacatgtggcgagtgatcctaaaattaagga |
213 |
Q |
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| T |
34272277 |
atttggcataacataattggtttaggtaaatggacatgtgactagtgatcctaaaatcaagga |
34272339 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 5699957 - 5700018
Alignment:
| Q |
154 |
ttggcataa-ataattgattgaggtaaatgaacatgtggcgagtgatcctaaaattaaggaa |
214 |
Q |
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||||||||| ||||||| || ||||||||||||| ||| | |||||||||||||| |||||| |
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| T |
5699957 |
ttggcataacataattggttaaggtaaatgaacacgtgactagtgatcctaaaatcaaggaa |
5700018 |
T |
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