View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19971_low_50 (Length: 258)

Name: NF19971_low_50
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19971_low_50
NF19971_low_50
[»] chr2 (12 HSPs)
chr2 (19-250)||(32310361-32310592)
chr2 (19-250)||(32813891-32814122)
chr2 (23-250)||(32564232-32564459)
chr2 (19-250)||(32786680-32786914)
chr2 (19-250)||(28214244-28214475)
chr2 (19-250)||(28221809-28222040)
chr2 (23-250)||(32306228-32306458)
chr2 (30-202)||(32317376-32317548)
chr2 (36-87)||(28183155-28183206)
chr2 (164-234)||(28171417-28171487)
chr2 (163-248)||(28174609-28174695)
chr2 (163-232)||(28183014-28183085)


Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 32310592 - 32310361
Alignment:
Q  19 aaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatccctttgttattagagtgatgaacattcgttggctttgaagctgtaaacg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||    
T  32310592 aaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatccctttgtcattagagtgatgaacgttcattggctttgaagctgtaaacg 32310493  T
Q  119 tcgaaaacgtgccgttgcagctgatattgttcttactgtttccaggacagtttggcctcatctgactgagaaaatcgagaggtatactcggatctggttg 218  Q
     ||||||||||||||||| ||||| |||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32310492 acgaaaacgtgccgttgctgctgaaattgttcttactgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatactcggatctggttg 32310393  T
Q  219 ccctgttccttgaaagtcgtacagcctttgct 250  Q
    ||||||||||||||||||||||||||||||||    
T  32310392 ccctgttccttgaaagtcgtacagcctttgct 32310361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 32813891 - 32814122
Alignment:
Q  19 aaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatccctttgttattagagtgatgaacattcgttggctttgaagctgtaaacg 118  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||| |||||||||||||||||||||    
T  32813891 aaagatgctccagatggtactgcagatgacaatgcttgcatgtatgacatccctttgtcattagagagttgaacattcattggctttgaagctgtaaacg 32813990  T
Q  119 tcgaaaacgtgccgttgcagctgatattgttcttactgtttccaggacagtttggcctcatctgactgagaaaatcgagaggtatactcggatctggttg 218  Q
    |||||||||||||||||| ||||| |||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32813991 tcgaaaacgtgccgttgctgctgaaattgttcttactgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatactcggatctggttg 32814090  T
Q  219 ccctgttccttgaaagtcgtacagcctttgct 250  Q
    ||||||||||||||||||||||| ||||||||    
T  32814091 ccctgttccttgaaagtcgtacaacctttgct 32814122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 23 - 250
Target Start/End: Original strand, 32564232 - 32564459
Alignment:
Q  23 atgctccagatggcactgcagatgacaatgcttgcatgtatgacatccctttgttattagagtgatgaacattcgttggctttgaagctgtaaacgtcga 122  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||| |||    
T  32564232 atgctccagatggaactgcagatgacaatgcttgcatgtatgacatccctttgtcattagagtgatgaacgttcattggctttgaagctgtaaacgacga 32564331  T
Q  123 aaacgtgccgttgcagctgatattgttcttactgtttccaggacagtttggcctcatctgactgagaaaatcgagaggtatactcggatctggttgccct 222  Q
    |||||||||||||| ||||| |||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32564332 aaacgtgccgttgctgctgaaattgttcttactgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatactcggatctggttgccct 32564431  T
Q  223 gttccttgaaagtcgtacagcctttgct 250  Q
    ||||||||||||||||||| ||||||||    
T  32564432 gttccttgaaagtcgtacaacctttgct 32564459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 32786680 - 32786914
Alignment:
Q  19 aaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatccctttgt---tattagagtgatgaacattcgttggctttgaagctgtaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   || ||||||||||||||||| ||  |||||||  |||||    
T  32786680 aaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatccctttgtcactactagagtgatgaacattcattttctttgaaattgtaa 32786779  T
Q  116 acgtcgaaaacgtgccgttgcagctgatattgttcttactgtttccaggacagtttggcctcatctgactgagaaaatcgagaggtatactcggatctgg 215  Q
    ||||||||||||||||||||| ||||||||| |||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||| || |||||    
T  32786780 acgtcgaaaacgtgccgttgctgctgatattattcttactgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatacttgggtctgg 32786879  T
Q  216 ttgccctgttccttgaaagtcgtacagcctttgct 250  Q
    |||||||||||||||||||||||||||||||||||    
T  32786880 ttgccctgttccttgaaagtcgtacagcctttgct 32786914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 28214244 - 28214475
Alignment:
Q  19 aaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatccctttgttattagagtgatgaacattcgttggctttgaagctgtaaacg 118  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  28214244 aaagatgctccagatgacactgcagatgacaatgcttgcttgtatgacatccctttgttattagagtgatgaacattcattggctttgaaactgtaaacg 28214343  T
Q  119 tcgaaaacgtgccgttgcagctgatattgttcttactgtttccaggacagtttggcctcatctgactgagaaaatcgagaggtatactcggatctggttg 218  Q
    |||||||| | ||||||| ||||| ||| |||||| ||||  ||||||||||| ||||||||||||| || |||||||||||||||||||| ||||||||    
T  28214344 tcgaaaacattccgttgctgctgacattattcttattgttgtcaggacagttttgcctcatctgactaaggaaatcgagaggtatactcgggtctggttg 28214443  T
Q  219 ccctgttccttgaaagtcgtacagcctttgct 250  Q
    ||||||||||||||||||||||||||||||||    
T  28214444 ccctgttccttgaaagtcgtacagcctttgct 28214475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 28222040 - 28221809
Alignment:
Q  19 aaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatccctttgttattagagtgatgaacattcgttggctttgaagctgtaaacg 118  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  28222040 aaagatgctccagatgacactgcagatgacaatgcttgcttgtatgacatccctttgttattagagtgatgaacattcattggctttgaaactgtaaacg 28221941  T
Q  119 tcgaaaacgtgccgttgcagctgatattgttcttactgtttccaggacagtttggcctcatctgactgagaaaatcgagaggtatactcggatctggttg 218  Q
    |||||||| | ||||||| | ||| ||| |||||| ||||  ||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||    
T  28221940 tcgaaaacattccgttgctgatgacattattcttattgttgtcaggacagttttgcctcatctgactgaggaaatcgagaggtatactcgggtctggttg 28221841  T
Q  219 ccctgttccttgaaagtcgtacagcctttgct 250  Q
    ||||||||||||||||||||| ||||||||||    
T  28221840 ccctgttccttgaaagtcgtagagcctttgct 28221809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 23 - 250
Target Start/End: Complemental strand, 32306458 - 32306228
Alignment:
Q  23 atgctccagatggcactgcagatgacaatgcttgcatgtatgacatccctttgt---tattagagtgatgaacattcgttggctttgaagctgtaaacgt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||   || ||||||||||| ||||   |||||||||| ||||||||||    
T  32306458 atgctccagatggcactgcagatgacaatgcttgcatgtatgacatccctttgtcactactagagtgatgagcatttactggctttgaaactgtaaacgt 32306359  T
Q  120 cgaaaacgtgccgttgcagctgatattgttcttactgtttccaggacagtttggcctcatctgactgagaaaatcgagaggtatactcggatctggttgc 219  Q
    ||||||||||||||||| | ||||||||||||||||||   ||||||||||| | |||||| |||||| ||||||||||||||||||||| |||||||||    
T  32306358 cgaaaacgtgccgttgctgttgatattgttcttactgtagtcaggacagtttagtctcatcagactgaaaaaatcgagaggtatactcgggtctggttgc 32306259  T
Q  220 cctgttccttgaaagtcgtacagcctttgct 250  Q
    |||||||||||||||||||||| ||||||||    
T  32306258 cctgttccttgaaagtcgtacaacctttgct 32306228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 30 - 202
Target Start/End: Complemental strand, 32317548 - 32317376
Alignment:
Q  30 agatggcactgcagatgacaatgcttgcatgtatgacatccctttgttattagagtgatgaacattcgttggctttgaagctgtaaacgtcgaaaacgtg 129  Q
    ||||||||||||| ||||||| ||||||  |||||| |||||||| |||||||||||||| |||||  ||||||||||| || ||| ||||||||| ||     
T  32317548 agatggcactgcatatgacaaagcttgcgcgtatgatatccctttattattagagtgatggacattaattggctttgaaactataaccgtcgaaaatgta 32317449  T
Q  130 ccgttgcagctgatattgttcttactgtttccaggacagtttggcctcatctgactgagaaaatcgagaggta 202  Q
    | ||||  ||||||||| |||| | ||||  ||||||| ||| ||||||| ||||| ||||||||||||||||    
T  32317448 ctgttgttgctgatattattctaattgttgtcaggacaattttgcctcatatgacttagaaaatcgagaggta 32317376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 28183206 - 28183155
Alignment:
Q  36 cactgcagatgacaatgcttgcatgtatgacatccctttgttattagagtga 87  Q
    ||||||||||||||| |||| |||||||||||||||||| || |||||||||    
T  28183206 cactgcagatgacaacgcttccatgtatgacatcccttttttgttagagtga 28183155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 28171487 - 28171417
Alignment:
Q  164 gacagtttggcctcatctgactgagaaaatcgagaggtatactcggatctggttgccctgttccttgaaag 234  Q
    |||||||| ||||||||| ||| || ||||| ||| |||||||| | ||||||||| ||||||||||||||    
T  28171487 gacagttttgcctcatcttactaagcaaatcaagaagtatactcaggtctggttgcgctgttccttgaaag 28171417  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 248
Target Start/End: Complemental strand, 28174695 - 28174609
Alignment:
Q  163 ggacagtttggcctcatctgactgagaaaatcgagaggtatac-tcggatctggttgccctgttccttgaaagtcgtacagcctttg 248  Q
    ||||||||| ||||||||||||| |||||||| |||| |||||  | | ||||||||| ||||||||| ||||| |||||| |||||    
T  28174695 ggacagtttagcctcatctgactaagaaaatcaagagctatacgacaggtctggttgcgctgttcctttaaagttgtacagactttg 28174609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 28183085 - 28183014
Alignment:
Q  163 ggacagtttggcctcatctgactgagaaaatcgagagg--tatactcggatctggttgccctgttccttgaa 232  Q
    ||||||||| ||||||||||||| || ||||| ||| |  ||||||| |||| ||||||| |||||||||||    
T  28183085 ggacagttttgcctcatctgactaaggaaatcaagaagtatatactcagatccggttgccttgttccttgaa 28183014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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