View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19971_low_52 (Length: 245)
Name: NF19971_low_52
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19971_low_52 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 27998889 - 27999118
Alignment:
| Q |
1 |
ataaattgagattgaacaatgtaacttttcattcatggtcccctaccttaatttaggaatgtaattagtacaaaaacaatttgtaacaaaaatcattcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27998889 |
ataaattgagattgaacaatgtaacttttcattcatggtcccctaccttaatttaggaatgtaattagtacaaaaacaatttgtaacaaaaatcattcaa |
27998988 |
T |
|
| Q |
101 |
aaggtcactactcactagtatttgacaccacaattcgtcatatatgacgcatgaaattcaagcgtaaacatgaagcaaaatttacacaacaaaaatataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27998989 |
aaggtcactactcactagtatttgacaccacaattcgtcatatatgacgcatgaaattcaagcgtaaacatgaagcaaaatttacacaacaaaaatataa |
27999088 |
T |
|
| Q |
201 |
aactcatgttattggaaatgggctagaaaa |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
27999089 |
aactcatgttattggaaatgggctagaaaa |
27999118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University