View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19971_low_56 (Length: 227)
Name: NF19971_low_56
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19971_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 75 - 224
Target Start/End: Complemental strand, 36463490 - 36463335
Alignment:
| Q |
75 |
aatcatgagcaagtaggcagatgattgttttaaattagcaagataaatatagagcattgtgatatatgcgagagatga------tgattaagattgtttt |
168 |
Q |
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| T |
36463490 |
aatcatgagcaagtaggcagatgattgttttaaattaggaagacaaatatagagcattgtgatatctgcgagagatgatgatgatgattaagattgtttt |
36463391 |
T |
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| Q |
169 |
gttatggcaaggaggaattggtgtcatatgaatcttgaggcaacataatatgaagc |
224 |
Q |
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| T |
36463390 |
gttgtggcaaggaagaattgttgtcatatgaatcttaaggcaatataatatgaagc |
36463335 |
T |
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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 30764272 - 30764337
Alignment:
| Q |
9 |
taaaaacataagtgaataagctaaagagaagaatagaagtaccttagt-aaccacaatgtgattca |
73 |
Q |
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||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||| |||||||| |
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| T |
30764272 |
taaaaacataagtgaatgagctaaagagaagaataaaagtaccttagtaaaccacaacgtgattca |
30764337 |
T |
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