View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19971_low_61 (Length: 211)
Name: NF19971_low_61
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19971_low_61 |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 14356848 - 14357010
Alignment:
| Q |
1 |
ccaccaaaatccttcctctttgaccaccaaacaaagaaaagaaaatttctcacaaataactcctacaccaacattgaacaacaacaacgacactactctt |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||| |
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| T |
14356848 |
ccaccaaaatccttcctctttgaccatcaaacaaagaaaagaaaatttctcacaaatgactcgtacacctacattgaacaacaacaacgacactactctt |
14356947 |
T |
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| Q |
101 |
ctgtctctcttccattttgcttctaacatagatcttcctccaattcttcatcttggtagtatg |
163 |
Q |
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| T |
14356948 |
ctgtctctcttccattttgcttctaacacagatcttcctccaattcttcatcttggtagtatg |
14357010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 29658170 - 29658008
Alignment:
| Q |
1 |
ccaccaaaatccttcctctttgaccaccaaacaaagaaaagaaaatttctcacaaataactcctacaccaacattgaacaacaacaacgacactactctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||| ||||||| |
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| T |
29658170 |
ccaccaaaatccttcctctttgaccaccaaacaaagaaaagaaaatttctcacaaatgattcgtacaccaacattgaacaacaacaacgacattactctt |
29658071 |
T |
|
| Q |
101 |
ctgtctctcttccattttgcttctaacatagatcttcctccaattcttcatcttggtagtatg |
163 |
Q |
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| T |
29658070 |
ttgtctctcttccatttttcttttaacacagatctctctccaattcttcatcttggtagtatg |
29658008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 5548366 - 5548201
Alignment:
| Q |
1 |
ccaccaaaatccttcctctttgaccaccaaacaaagaaaagaaaatttctcacaaataactcctacaccaacattgaacaacaacaacgacact------ |
94 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | | |||||||||||| |||||||||||||||||| |
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| T |
5548366 |
ccaccaaaatccttcctctttgaccaccaaacaaagaaaagaaaagttctcacaaatgatgcgtacaccaacattcaacaacaacaacgacactctgcat |
5548267 |
T |
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| Q |
95 |
--actcttctgtctctcttccattttgcttctaacatagatcttcctccaattcttcatcttggta |
158 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
5548266 |
acactcttctgtctctcttccattttgcttccaacatagatctctctccaattcttcatcttggta |
5548201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 21730700 - 21730756
Alignment:
| Q |
104 |
tctctcttccattttgcttctaacatagatct-tc-ctccaattcttcatcttggta |
158 |
Q |
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||||||||||||||||||||||||| |||||| || ||||||||||||||||||||| |
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| T |
21730700 |
tctctcttccattttgcttctaacacagatctctctctccaattcttcatcttggta |
21730756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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