View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19971_low_7 (Length: 552)

Name: NF19971_low_7
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19971_low_7
NF19971_low_7
[»] chr8 (3 HSPs)
chr8 (24-116)||(13659621-13659713)
chr8 (24-116)||(13718263-13718355)
chr8 (25-106)||(28811057-28811138)
[»] chr4 (9 HSPs)
chr4 (21-108)||(51928846-51928933)
chr4 (21-106)||(20485680-20485765)
chr4 (25-106)||(27487869-27487950)
chr4 (25-106)||(47042612-47042693)
chr4 (25-106)||(27461056-27461137)
chr4 (28-104)||(24354854-24354930)
chr4 (25-102)||(27505196-27505273)
chr4 (29-103)||(27480406-27480480)
chr4 (25-106)||(27477320-27477401)
[»] chr5 (1 HSPs)
chr5 (21-106)||(13912386-13912471)
[»] chr2 (3 HSPs)
chr2 (21-106)||(26204040-26204125)
chr2 (25-114)||(35808794-35808883)
chr2 (28-104)||(42348134-42348210)
[»] chr1 (1 HSPs)
chr1 (24-107)||(42396947-42397030)
[»] chr7 (2 HSPs)
chr7 (25-106)||(37175753-37175834)
chr7 (490-538)||(3664036-3664084)
[»] chr6 (2 HSPs)
chr6 (25-107)||(22685790-22685872)
chr6 (25-107)||(22753196-22753278)


Alignment Details
Target: chr8 (Bit Score: 81; Significance: 7e-38; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 13659621 - 13659713
Alignment:
Q  24 acgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgacaatgttgttt 116  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  13659621 acgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgactatgttgttt 13659713  T

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Target: chr8; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 13718263 - 13718355
Alignment:
Q  24 acgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgacaatgttgttt 116  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  13718263 acgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgactatgttgttt 13718355  T

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Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 28811057 - 28811138
Alignment:
Q  25 cgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgac 106  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28811057 cgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgac 28811138  T

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Target: chr4 (Bit Score: 80; Significance: 3e-37; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 51928933 - 51928846
Alignment:
Q  21 aaaacgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgacaa 108  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  51928933 aaaacgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgacaa 51928846  T

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Target: chr4; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 20485680 - 20485765
Alignment:
Q  21 aaaacgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgac 106  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  20485680 aaaacgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgac 20485765  T

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Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 27487950 - 27487869
Alignment:
Q  25 cgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgac 106  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27487950 cgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgac 27487869  T

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Target: chr4; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 47042693 - 47042612
Alignment:
Q  25 cgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgac 106  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  47042693 cgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgac 47042612  T

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Target: chr4; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 27461137 - 27461056
Alignment:
Q  25 cgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgac 106  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27461137 cgtcgcctgagagattcgaactctcgcagggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgac 27461056  T

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Target: chr4; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 24354930 - 24354854
Alignment:
Q  28 cgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcg 104  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24354930 cgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcg 24354854  T

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Target: chr4; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 27505196 - 27505273
Alignment:
Q  25 cgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaag 102  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27505196 cgtcacctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaag 27505273  T

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Target: chr4; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 27480480 - 27480406
Alignment:
Q  29 gcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagc 103  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27480480 gcctgagagattcgaactctcacggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagc 27480406  T

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Target: chr4; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 27477401 - 27477320
Alignment:
Q  25 cgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgac 106  Q
    |||| |||||||||||| || ||| |||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||    
T  27477401 cgtcacctgagagattcgaaatcttgcggggaaaccccatgtaattagcaggcacacgccttacccactcggccaaagcgac 27477320  T

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Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 13912471 - 13912386
Alignment:
Q  21 aaaacgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgac 106  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13912471 aaaacgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgac 13912386  T

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Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 26204125 - 26204040
Alignment:
Q  21 aaaacgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgac 106  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26204125 aaaacgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgac 26204040  T

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Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 35808883 - 35808794
Alignment:
Q  25 cgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgacaatgttgt 114  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  35808883 cgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgactatgttgt 35808794  T

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Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 42348134 - 42348210
Alignment:
Q  28 cgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcg 104  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42348134 cgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcg 42348210  T

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Target: chr1 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 42396947 - 42397030
Alignment:
Q  24 acgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgaca 107  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  42396947 acgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgaca 42397030  T

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Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 37175834 - 37175753
Alignment:
Q  25 cgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgac 106  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37175834 cgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgac 37175753  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 490 - 538
Target Start/End: Original strand, 3664036 - 3664084
Alignment:
Q  490 tgcatcttttgttgcttcataagcatcccaaactacactcacattcttc 538  Q
    ||||||||||||||||||||| ||||||||||| |||||||| ||||||    
T  3664036 tgcatcttttgttgcttcatatgcatcccaaaccacactcactttcttc 3664084  T

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Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 22685790 - 22685872
Alignment:
Q  25 cgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgaca 107  Q
    |||| ||| |||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  22685790 cgtcacctaagagattcgaactctcacggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagtgaca 22685872  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 22753278 - 22753196
Alignment:
Q  25 cgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgaca 107  Q
    |||| ||| |||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  22753278 cgtcacctaagagattcgaactctcacggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagtgaca 22753196  T

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