View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19971_low_9 (Length: 518)

Name: NF19971_low_9
Description: NF19971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19971_low_9
NF19971_low_9
[»] chr8 (2 HSPs)
chr8 (1-397)||(770345-770754)
chr8 (400-508)||(770796-770906)
[»] chr1 (1 HSPs)
chr1 (1-397)||(51389299-51389726)
[»] chr3 (6 HSPs)
chr3 (400-518)||(12572090-12572207)
chr3 (400-518)||(13548554-13548671)
chr3 (137-262)||(19768374-19768504)
chr3 (138-262)||(29199889-29200016)
chr3 (64-119)||(29199801-29199856)
chr3 (25-119)||(19768244-19768341)
[»] chr7 (3 HSPs)
chr7 (216-396)||(8028140-8028332)
chr7 (1-115)||(32662960-32663077)
chr7 (132-205)||(32663109-32663187)
[»] chr4 (2 HSPs)
chr4 (137-262)||(37616783-37616913)
chr4 (25-119)||(37616946-37617043)
[»] chr5 (1 HSPs)
chr5 (400-483)||(4351890-4351975)
[»] chr6 (1 HSPs)
chr6 (45-119)||(22082960-22083034)


Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 770345 - 770754
Alignment:
Q  1 cttcaatttcaattctgcctttggtgtttctgtttagccgtttacgatagactttgtttgttcaattttactatttgcctaatcgttgttgcatgcttga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||    
T  770345 cttcaatttcaattctgcctttggtgtttctgtttagccgtttacgatagactttgtctattcaattttactatttgcctaatcgttgttgcatgtttga 770444  T
Q  101 atccatgaccctcttcttttagggaccatttgtttgttttattttgattcacat-----taaaattacttatatcttttctttttatcactctttctaaa 195  Q
    ||||||||||||||||||| |||||||||||||||    |||||||||||||||     ||||||||||||||||||||||||||||||| || ||||||    
T  770445 atccatgaccctcttcttt-agggaccatttgttt----tattttgattcacatcatcttaaaattacttatatcttttctttttatcaccctgtctaaa 770539  T
Q  196 acttctttgtttggcctttatatggatttacatttgcaagaatttaagcccctggtttgggttttttgctgactatttttcctg--------gattaacg 287  Q
    ||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||        ||||||||    
T  770540 acttctttgtttggcctttttatggatttgcatttgcgagaatttaagcccctggtttgggttttttgctgactatttttcctggattatgtgattaacg 770639  T
Q  288 gagcttaaccctgaaaggagaatggcaaagtcctgatacattactttccttct----cttgactttagacgttcgtgaatgtgatttttacttga-tata 382  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||    ||||||||||||||||||||||||||||| |||||||| ||||    
T  770640 gagcttaaccctgaaaggagaatggcaaggtcctgatacattactttccttctcttccttgactttagacgttcgtgaatgtgattgttacttgattata 770739  T
Q  383 ttgctataaatctta 397  Q
    |||||||||||||||    
T  770740 ttgctataaatctta 770754  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 400 - 508
Target Start/End: Original strand, 770796 - 770906
Alignment:
Q  400 ccccaaagttactctaacacaatt-ttgc-gtctttttattttgttataatttataggttggcacagtatttgtagctatcctaaggttcaattttgagt 497  Q
    ||||||||||| |||||||||| | |||  |||||||||| |||| |||||||||||| ||| ||| | |||||||| ||  ||||||||||||||| ||    
T  770796 ccccaaagttagtctaacacaagtgttgttgtctttttatattgtaataatttataggctggtacaatgtttgtagccataataaggttcaattttgtgt 770895  T
Q  498 atattttgttg 508  Q
    || ||||||||    
T  770896 atgttttgttg 770906  T

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Target: chr1 (Bit Score: 157; Significance: 3e-83; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 51389726 - 51389299
Alignment:
Q  1 cttcaatttcaattctgcctttggtgtttctgtttagccgttta---cgatagactttgtttgttcaattttactatttgcctaatcgttgttgcatgct 97  Q
    |||||||||||| ||||||||||||||||||||||||||||||    |||||||||||||| ||||||||||       ||||| || ||||||||||||    
T  51389726 cttcaatttcaagtctgcctttggtgtttctgtttagccgttttgtgcgatagactttgttcgttcaatttt-------gcctattcattgttgcatgct 51389634  T
Q  98 tgaatccatgaccctcttcttt-------------------tagggaccatttgtttgttttattttgattcacat-----taaaattacttatatcttt 173  Q
    ||||||||||||||||||||||                   ||||||||||||||||    |||||||||||||||     |||||||||||||||||||    
T  51389633 tgaatccatgaccctcttctttaggacttctcatgtataaatagggaccatttgttt----tattttgattcacatcatcttaaaattacttatatcttt 51389538  T
Q  174 tctttttatcactctttctaaaacttctttgtttggcctttatatggatttacatttgcaagaatttaagcccctggtttgggtt---ttttgctgacta 270  Q
    |||||||||||||||||||||||||||||||||||  |||| ||||||||| ||||||| |||||||||||||||||||||||||   ||||||||||||    
T  51389537 tctttttatcactctttctaaaacttctttgtttgatctttttatggatttgcatttgcgagaatttaagcccctggtttgggtttttttttgctgacta 51389438  T
Q  271 tttttcctg--------gattaacggagcttaaccctgaaaggagaatggcaaagtcctgatacattactttccttct----cttgactttagacgttcg 358  Q
    |||||| ||        ||||||||||| |||| ||||||||||||||| | ||||||||||||||||||||||||||    |||||||||||| |||||    
T  51389437 tttttcatggattatgtgattaacggaggttaaacctgaaaggagaatgac-aagtcctgatacattactttccttctcttccttgactttagatgttcg 51389339  T
Q  359 tgaatgtgatttttacttga-tatattgctataaatctta 397  Q
    ||||||||||| |||||||| ||||||| |||||||||||    
T  51389338 tgaatgtgattgttacttgattatattgttataaatctta 51389299  T

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Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 12572207 - 12572090
Alignment:
Q  400 ccccaaagttactctaacacaattttgcgtctttttattttgttataatttataggttggcacagtatttgtagctatcctaaggttcaattttgagtat 499  Q
    ||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12572207 ccccaaagttagtctaacacaattttt-gtctttttattttgttataatttataggttggcacagtgtttgtagctatcctaaggttcaattttgagtat 12572109  T
Q  500 attttgttgcagtttttta 518  Q
    |||||||||||||||||||    
T  12572108 attttgttgcagtttttta 12572090  T

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Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 13548671 - 13548554
Alignment:
Q  400 ccccaaagttactctaacacaattttgcgtctttttattttgttataatttataggttggcacagtatttgtagctatcctaaggttcaattttgagtat 499  Q
    ||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13548671 ccccaaagttagtctaacacaattttt-gtctttttattttgttataatttataggttggcacagtgtttgtagctatcctaaggttcaattttgagtat 13548573  T
Q  500 attttgttgcagtttttta 518  Q
    |||||||||||||||||||    
T  13548572 attttgttgcagtttttta 13548554  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 137 - 262
Target Start/End: Original strand, 19768374 - 19768504
Alignment:
Q  137 ttttattttgattcacatt-----aaaattacttatatcttttctttttatcactctttctaaaacttctttgtttggcctttatatggatttacatttg 231  Q
    |||||||||||||||||||     ||||||  ||||||| ||| |||||| |||||| ||||| ||||||||||||| | ||| ||||||||| ||||||    
T  19768374 ttttattttgattcacattttcttaaaattgtttatatcatttttttttaacactctctctaacacttctttgtttgacatttttatggatttgcatttg 19768473  T
Q  232 caagaatttaagcccctggtttgggtttttt 262  Q
    ||||||||||| |||||  ||||||||||||    
T  19768474 caagaatttaaacccctcatttgggtttttt 19768504  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 138 - 262
Target Start/End: Original strand, 29199889 - 29200016
Alignment:
Q  138 tttattttgattcaca-----ttaaaattacttatatcttttctttttatcactctttctaaaacttctttgtttggcctttatatggatttacatttgc 232  Q
    ||||||||||||||||     ||||||||  |||||||||| |||||||| | |||  |||| ||||||||||||| | ||| ||||||||| |||||||    
T  29199889 tttattttgattcacactgtcttaaaattgtttatatctttcctttttattattct--ctaacacttctttgtttgacatttttatggatttgcatttgc 29199986  T
Q  233 aagaatttaagcccctggtttgggtttttt 262  Q
    |||||||||| |||||  ||||||||||||    
T  29199987 aagaatttaaacccctcatttgggtttttt 29200016  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 29199801 - 29199856
Alignment:
Q  64 aattttactatttgcctaatcgttgttgcatgcttgaatccatgaccctcttcttt 119  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||    
T  29199801 aattttactctttgcgtaatcgttgttgcatgcttgaatccatgactctcttcttt 29199856  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 119
Target Start/End: Original strand, 19768244 - 19768341
Alignment:
Q  25 tgtttctgtttagccgttta---cgatagactttgtttgttcaattttactatttgcctaatcgttgttgcatgcttgaatccatgaccctcttcttt 119  Q
    ||||||||||||||| |||    |||||| |||||||  |||||||||||| |||||||||||  |||||||||| |||||||||| | |||||||||    
T  19768244 tgtttctgtttagccattttgtgcgataggctttgttcattcaattttactctttgcctaatctgtgttgcatgcatgaatccatgtctctcttcttt 19768341  T

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Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 216 - 396
Target Start/End: Complemental strand, 8028332 - 8028140
Alignment:
Q  216 tatggatttacatttgcaagaatttaagcccctggtttgggttttttgctgactatttttcctggatta--------acggagcttaaccctgaaaggag 307  Q
    ||||||||| ||||||| || |||||||||||||||||||||| ||||||||||||||| |||||||||        | |||| |||| |||||||||||    
T  8028332 tatggattttcatttgcgaggatttaagcccctggtttgggttgtttgctgactatttt-cctggattatgtgattaatggaggttaaacctgaaaggag 8028234  T
Q  308 aatggcaaagtcctgatacattactttccttctc----ttgactttagacgttcgtgaatgtgatttttacttga-tatattgctataaatctt 396  Q
    |||||||| |||||||||||||||||||||||||    ||||||||| |||||||||||| ||||| |||||||| |||||| |||||||||||    
T  8028233 aatggcaaggtcctgatacattactttccttctcttcattgactttatacgttcgtgaatttgattgttacttgattatatttctataaatctt 8028140  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 32662960 - 32663077
Alignment:
Q  1 cttcaatttcaattctgcctttggtgtttctgtttagccgttt---acgatagactttgtttgttcaattttactatttgcctaatcgttgttgcatgct 97  Q
    ||||| |||||| | |||||||||||||  |||||||||||||   |||||||| ||||||  |||| ||||||| ||| || |||| |||||||||||     
T  32662960 cttcagtttcaagtttgcctttggtgttaatgtttagccgttttgtacgatagagtttgttcattcagttttactcttttcccaatcattgttgcatgcg 32663059  T
Q  98 tgaatccatgaccctctt 115  Q
    ||||| ||| ||||||||    
T  32663060 tgaattcattaccctctt 32663077  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 32663109 - 32663187
Alignment:
Q  132 gtttgttttattttgattcacatta-----aaattacttatatcttttctttttatcactctttctaaaacttctttgt 205  Q
    |||||||||||| ||||||||||||     ||||||||||||||||| |||||||| ||||| ||||| |||| |||||    
T  32663109 gtttgttttattatgattcacattatcttaaaattacttatatctttcctttttattactctctctaacacttatttgt 32663187  T

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Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 137 - 262
Target Start/End: Complemental strand, 37616913 - 37616783
Alignment:
Q  137 ttttattttgattcacatt-----aaaattacttatatcttttctttttatcactctttctaaaacttctttgtttggcctttatatggatttacatttg 231  Q
    |||||||||||||||||||     ||||||  ||||||||||||||||||| ||||| ||||| ||||||||||||| | ||| ||||||||| ||||||    
T  37616913 ttttattttgattcacattttcttaaaattgtttatatcttttctttttattactctctctaacacttctttgtttgacatttttatggatttgcatttg 37616814  T
Q  232 caagaatttaagcccctggtttgggtttttt 262  Q
    ||||||||||| |||||  ||||||||||||    
T  37616813 caagaatttaaacccctcatttgggtttttt 37616783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 119
Target Start/End: Complemental strand, 37617043 - 37616946
Alignment:
Q  25 tgtttctgtttagccgttta---cgatagactttgtttgttcaattttactatttgcctaatcgttgttgcatgcttgaatccatgaccctcttcttt 119  Q
    ||||||||||||||| |||    |||||| |||| ||  |||||||||||| ||||||||||   |||||||||| |||||||||| | |||||||||    
T  37617043 tgtttctgtttagccattttgtgcgataggcttttttcattcaattttactctttgcctaatttgtgttgcatgcatgaatccatgtctctcttcttt 37616946  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 400 - 483
Target Start/End: Original strand, 4351890 - 4351975
Alignment:
Q  400 ccccaaagttactctaacacaatt--ttgcgtctttttattttgttataatttataggttggcacagtatttgtagctatcctaag 483  Q
    ||||||||||| ||||||||||||  ||  |||||||||||||||||||| ||||||||||||||| | ||||||||||| |||||    
T  4351890 ccccaaagttagtctaacacaattatttttgtctttttattttgttataagttataggttggcacaatgtttgtagctatactaag 4351975  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 45 - 119
Target Start/End: Original strand, 22082960 - 22083034
Alignment:
Q  45 cgatagactttgtttgttcaattttactatttgcctaatcgttgttgcatgcttgaatccatgaccctcttcttt 119  Q
    |||||| |||||||  |||||||||||| |||||||||||  |||||||||| |||||||||| | |||||||||    
T  22082960 cgataggctttgttcattcaattttactctttgcctaatctgtgttgcatgcatgaatccatgtctctcttcttt 22083034  T

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