View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19972_high_1 (Length: 704)
Name: NF19972_high_1
Description: NF19972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19972_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 641; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 15 - 686
Target Start/End: Original strand, 27355618 - 27356290
Alignment:
| Q |
15 |
cacagagaatgcattagtgtagtaatctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgttactagctag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27355618 |
cacagagaatgcattagtgtagtaatctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgttactagctag |
27355717 |
T |
|
| Q |
115 |
aagttagttggataaggatgagttagttacttaaagattaactcaccatatggtttacttggtggtcaagtaaccatggttagttagaagttttgatttg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27355718 |
aagttagttggataaggatgagttagttacttaaagattaactcaccatatggtttacttggtggtcaagaaaccatggttagttagaagttttgatttg |
27355817 |
T |
|
| Q |
215 |
tgtatataagttatgtattgcacttagaaaatgtatcatataagttgaataaaatttcaagaatcctttttccacaaaattaagcaacttatcccaacat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27355818 |
tgtatataagttatgtattgcacttagaaaatgtatcatataagttgaataaaatttccagaatcctttttccacaaaattaagcaacttatcccaacat |
27355917 |
T |
|
| Q |
315 |
aa-ttgcctattaatcttgtaaattgatgattatttatcatgtgtaaattgcctattagcgtttagttccttccttgaaataaggcactaaacatggagt |
413 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27355918 |
aaattgcctattaatcttgtaaattgatgattatttatcatgtgtaaattgcctattagcgtttagttccttccttgaaataaggcactaaacatggagt |
27356017 |
T |
|
| Q |
414 |
agagaatttatgagtaagtaataggcaaaaccgacacattctaactgtagtgcaaaaagaatgactatttattatgaaaatgaaatgttgaagaaaaata |
513 |
Q |
| |
|
| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27356018 |
aaagaatttatgagtcagtaataggcaaaaacgacacattctaactgtagtgcaaaaagaatgactatttattatgaaaatgaaatgttgaagaaaaata |
27356117 |
T |
|
| Q |
514 |
atcatgttaggaacatgcatctttggcgccaaaacaatgaaagcaatcacaaatcttgtccaaatgtgatgtcaaattaataacacacttgtttctatag |
613 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27356118 |
atcatgttaggaacatgcaactttggcgccaaaacaatgaaagcaatcacaaatcttgtccaaatgtgatgtcaaattaataacacacttgtttctatag |
27356217 |
T |
|
| Q |
614 |
aattacacacactttgccaagccagaagcaagtccatgattacacatttaattgattcataaaaagtaaaaag |
686 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27356218 |
aattacacacactttgccaagccagaagcaagtccatgattacacatttaattgattcataaaaagtaaaaag |
27356290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 15 - 686
Target Start/End: Complemental strand, 45411542 - 45410873
Alignment:
| Q |
15 |
cacagagaatgcattagtgtagtaatctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgttactagctag |
114 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45411542 |
cacagagaatgcattaatgtagtaatctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgttactagctag |
45411443 |
T |
|
| Q |
115 |
aagttagttggataaggatgagttagttacttaaagattaactcaccatatggtttacttggtggtcaagtaaccatggttagttagaagttttgatttg |
214 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45411442 |
aagttagttggataaggatgagatagttacttaaagattaactcacgatatggtttacttggtggtcaagtaatcatggttagttagaagttttgatttg |
45411343 |
T |
|
| Q |
215 |
tgtatataagttatgtattgcacttagaaaatgtatcatataagttgaataaaatttcaagaatcctttttccacaaaattaagcaacttatcccaacat |
314 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45411342 |
tgtatataaattatgtattgcactgagaaaatgtatcatataagttgaataaaatttccacaatcctttttccacaaaattaagcaacttatcccaacat |
45411243 |
T |
|
| Q |
315 |
-aattgcctattaatcttgtaaattgatgattatttatcatgtgtaaattgcctattagcgtttagttccttccttgaaataaggcactaaacatggagt |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45411242 |
aaattgcctattaatcttgtaaattgatgattatttatca-------------tattcgcgtttagttccttccttgaaataaggcactaaacatggagt |
45411156 |
T |
|
| Q |
414 |
agagaatttatgagt------aagtaataggcaaaaccgacacattctaactgtagtgcaaaaagaatgactatttattatgaaaatgaaatgttgaaga |
507 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45411155 |
agagaatttatgagttaagtaaagtaataggcaaagacgacacattctaactgtattgcaaaaagaatgactatttattatgaaaatgaaatgttgaaga |
45411056 |
T |
|
| Q |
508 |
aaaataatcatgttaggaacatgcatctttggcgccaaaacaatgaaagcaatcacaaatcttgtccaaatgtgatgtcaaattaataacacacttgttt |
607 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45411055 |
aaaataatcatgttaggaacatgcaactttggcgccaaaacaatgaaagcaatcacaaatcttgtccaaatgtgatgtcaaattaataacacacttgttt |
45410956 |
T |
|
| Q |
608 |
ctatagaattacacacactttgccaagccagaagcaagtccatgattacacattta----attgattcataaaaagtaaaaag |
686 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
45410955 |
ctatagaattacacacactttgccaagccagaagcaagtccatgattacacatttaattgattgattcataaaaagtaaaaag |
45410873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 9e-38; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 90 - 234
Target Start/End: Original strand, 7552123 - 7552267
Alignment:
| Q |
90 |
ttattattagtttgttactagctagaagttagttggataaggatgagttagttacttaaagattaactcaccatatggtttacttggtggtcaagtaacc |
189 |
Q |
| |
|
||||||||| |||||| | |||||||||| || |||||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
7552123 |
ttattattaaattgttattggctagaagttggtcggataaggatgagttagttagttaaaaattaactcaccatagaatttacttgcgagtcaagtaacc |
7552222 |
T |
|
| Q |
190 |
atggttagttagaagttttgatttgtgtatataagttatgtattg |
234 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7552223 |
atagttagttagaagttttgatttgtgtatataagtgatgtattg |
7552267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 190
Target Start/End: Complemental strand, 8850027 - 8849934
Alignment:
| Q |
98 |
agtttgttactagctagaagttagttggataaggatgagttagttacttaaagattaac-tcaccatatggtttacttggtggtcaagtaacca |
190 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||| ||||||||||| || ||||||||| | | ||||||||||||||| | ||||| |||||| |
|
|
| T |
8850027 |
agttagttactagctaaaagttagttggataagattgagttagttagtttaagattaacttgatcatatggtttacttgatagtcaattaacca |
8849934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 37 - 224
Target Start/End: Complemental strand, 14806416 - 14806232
Alignment:
| Q |
37 |
taatctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgttactagctagaagttagttggataaggatgag |
136 |
Q |
| |
|
||||||| ||||||||||| |||||| | ||||||||||||| | ||| |||||| | ||||||||| ||||||||||||||||||||||| || |
|
|
| T |
14806416 |
taatctaatgtatagttgttatgatgtacatactttagattaaaacaagtttgttaaaa---gtttgttacaggctagaagttagttggataaggacgaa |
14806320 |
T |
|
| Q |
137 |
ttagttacttaaagattaactcaccatatggtttacttggtggtcaagtaaccatggttagttagaagttttgatttgtgtatataag |
224 |
Q |
| |
|
||||||| ||| |||||||||||| ||| || | ||||||| ||| |||||| |||||| ||||||||| ||||||||||||||| |
|
|
| T |
14806319 |
ttagttagttagagattaactcactatagatttaatttggtggacaaacaaccatagttagtcagaagttttaatttgtgtatataag |
14806232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 174
Target Start/End: Complemental strand, 10281049 - 10280970
Alignment:
| Q |
95 |
attagtttgttactagctagaagttagttggataaggatgagttagttacttaaagattaactcaccatatggtttactt |
174 |
Q |
| |
|
|||||||||| |||| ||||||||||||| || ||||||||||||||| ||| ||||||||||||| || ||||||||| |
|
|
| T |
10281049 |
attagtttgtgactatctagaagttagttagagaaggatgagttagttggttagagattaactcaccttagggtttactt |
10280970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 14798575 - 14798507
Alignment:
| Q |
23 |
atgcattagtgtagtaatctagtgtatagttgtaatgatgcatatactttagattagcataagcttgtt |
91 |
Q |
| |
|
||||||| ||| |||||||| ||| ||| ||| |||||| |||||||||||||||| ||||| ||||| |
|
|
| T |
14798575 |
atgcatttgtgcggtaatctaatgtttagctgttatgatgtatatactttagattagaataagtttgtt |
14798507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 100 - 222
Target Start/End: Original strand, 55212258 - 55212377
Alignment:
| Q |
100 |
tttgttactagctagaagttagttggataaggatgagttagttacttaaagattaactcaccatatggtttacttggtggtcaagtaaccatggttagtt |
199 |
Q |
| |
|
||||||||||| |||||||| ||| ||||||||||||||||||| |||||| | | ||||||||||||||||| |||||||||||||| ||| || |
|
|
| T |
55212258 |
tttgttactagatagaagttggtttgataaggatgagttagttag----agattagcaaatcatatggtttacttggtagtcaagtaaccatgattaatt |
55212353 |
T |
|
| Q |
200 |
agaagtttt-gatttgtgtatata |
222 |
Q |
| |
|
| ||||||| |||||||||||||| |
|
|
| T |
55212354 |
ataagttttcgatttgtgtatata |
55212377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 236
Target Start/End: Complemental strand, 2060339 - 2060165
Alignment:
| Q |
52 |
ttgtaatgatgcatatactttagattagcataagcttgttattattagtttgttactagctagaagt-tagttggataaggatgagttagttacttaaag |
150 |
Q |
| |
|
|||| |||||| |||||||||||||||| | ||| |||||| | ||| |||||||| || ||| ||||| ||||||||||||||||||| ||| || |
|
|
| T |
2060339 |
ttgttatgatgtatatactttagattagtacaagtttgttagaa---gttcgttactagttataaggatagttagataaggatgagttagttagttagag |
2060243 |
T |
|
| Q |
151 |
attaactcaccatatggtttacttggtggtcaagtaaccatggttagttagaagtttt-gatttgtgtatataagttatgtattgca |
236 |
Q |
| |
|
|||||||| |||||| |||||| ||||||||| ||||||||||||||| |||||||||||| |||| ||||||||| |
|
|
| T |
2060242 |
attaactc---------tttactcggtggtttagtaaccataattagttagaagttttggatttgtgtatacaagtggtgtattgca |
2060165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 31608605 - 31608527
Alignment:
| Q |
39 |
atctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgttactagctagaagtta |
120 |
Q |
| |
|
||||||||||||||||| ||||| ||||| ||||||||||| || ||| ||||||||||||| |||||||||||||| |
|
|
| T |
31608605 |
atctagtgtatagttgttttgatgtatatatattagattagcacaaatttg---ttattagtttgttcctagctagaagtta |
31608527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 286 - 314
Target Start/End: Complemental strand, 2060055 - 2060027
Alignment:
| Q |
286 |
ccacaaaattaagcaacttatcccaacat |
314 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
2060055 |
ccacaaaattaagcaacttatcccaacat |
2060027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 115 - 201
Target Start/End: Original strand, 38163088 - 38163179
Alignment:
| Q |
115 |
aagttagttggataaggatgagttagttacttaa----agattaactc-accatatggtttacttggtggtcaagtaaccatggttagttag |
201 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||| | ||||||| | |||| |||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
38163088 |
aagttagttggataagattgagttagttagttaattagaaattaacttgatcatagggtttacttggtagtcaagtaaccatagttagttag |
38163179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 98 - 201
Target Start/End: Complemental strand, 43935931 - 43935827
Alignment:
| Q |
98 |
agtttgttactagctagaagttagttggataaggatgagttagttacttaaagattaac-tcaccatatggtttacttggtggtcaagtaaccatggtta |
196 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||| |||| || || |||||||||||| | | |||| ||||||||| ||||||||||||| ||| |
|
|
| T |
43935931 |
agttagttaccagctagaagttagttggataagattgagataaatagttaaagattaacttaatcatagcgtttacttgacagtcaagtaaccataatta |
43935832 |
T |
|
| Q |
197 |
gttag |
201 |
Q |
| |
|
||||| |
|
|
| T |
43935831 |
gttag |
43935827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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