View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19972_high_11 (Length: 309)
Name: NF19972_high_11
Description: NF19972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19972_high_11 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: scaffold0014 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 91094 - 91378
Alignment:
| Q |
1 |
tgccatcgtagaaatcaaggatggtgcaatgtcaaacgattctgaaattcaccccatctgaccatgagttttgcaagttcaaatttggaagaaaactctg |
100 |
Q |
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| T |
91094 |
tgccatcgtagaaatcaagggatgtgcaatgtcaaacgactctgaaattcaccccagctgaccatgagttttgcaagttcaaatttggaagaaaactctg |
91193 |
T |
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| Q |
101 |
cgataatatttggaacagtttcatcatcgaagctatagtgcaatgattcttttgttgttggaaatgccatgtaccttgagaagtgacaagcagtgttgtt |
200 |
Q |
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| T |
91194 |
cgataatatttggaacagtttcatcatcgaagctatagtgcaatgattcctttgttgttggaaatgccatgtaccttgagaagtgacaagcagtgttgtt |
91293 |
T |
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| Q |
201 |
tgtgcttcaattataaataaaaatacagatagaactattgggtgtacaaataacaaaataatttaacaggtggcgattgatagct |
285 |
Q |
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| T |
91294 |
tgtgcttcaattataaataaaaatacagatagaactattgggtgtacaaataacaaaataatttaacaggtggcgattcatagct |
91378 |
T |
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Target: chr6 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 114 - 285
Target Start/End: Complemental strand, 6640290 - 6640121
Alignment:
| Q |
114 |
aacagtttcatcatcgaagctatagtgcaatgattcttttgttgttggaaatgccatgtaccttgagaagtgacaagcagtgttgtttgtgcttcaatta |
213 |
Q |
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| T |
6640290 |
aacagtttcatcatctaaactatattgcaataattcctttgttgttggaaatgccatataccttgaaaagtggcgagcagtgttgtttgtgcttcaatta |
6640191 |
T |
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| Q |
214 |
taaataaaaatacagatagaactattgggtgtacaaataacaaaataatttaacaggtggcgattgatagct |
285 |
Q |
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| T |
6640190 |
taaat--aaatacaggcagaactatttgttgtacatgtaacaaaataatttaacgggcggcaattgatagct |
6640121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 6640375 - 6640298
Alignment:
| Q |
5 |
atcgtagaaatcaagg-atggtgcaatgtcaaacgattctgaaattcaccccatctgaccatgagttttgcaagttca |
81 |
Q |
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|||||||||||||||| || ||||||| |||||| |||||| ||||||||||| || |||||| |||||||||||||| |
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| T |
6640375 |
atcgtagaaatcaagggatagtgcaatctcaaacaattctggaattcaccccaacttaccatgtgttttgcaagttca |
6640298 |
T |
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