View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19972_high_12 (Length: 295)
Name: NF19972_high_12
Description: NF19972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19972_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 38720991 - 38720715
Alignment:
| Q |
1 |
ttaagattgattacatcagctccagcatgaagaagtaccttgaaagcttccacgttaccctctgcggcagctatcatgacagctgaaagtccatttccat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38720991 |
ttaagattgattacatcagctccagcatgaagaagtaccttgaaagcttccacgttaccctctgcggcagctatcatgacagctgaaagtccatttccat |
38720892 |
T |
|
| Q |
101 |
tttgttcatctagatttatattccggtattcaatgagctttttcaaagcctctatgtcattcgcgcgagtgacaaataacaaagcggaaaatctagatgc |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38720891 |
tttgttcatctagatttatattccggtattctatgagctttttcaaagcctctatgtcattcgcgcgagtgacaaataacaaagcggaaaatctagatgc |
38720792 |
T |
|
| Q |
201 |
attacttgatttaacacctgttccggatctaattatatccagaattgctttatgataaacttgagtccactgattag |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38720791 |
attacttgatttaacacctgttccggatctaattatatccagaattgctttctgataaacttgagtccactgattag |
38720715 |
T |
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