View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19972_high_14 (Length: 255)

Name: NF19972_high_14
Description: NF19972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19972_high_14
NF19972_high_14
[»] chr8 (11 HSPs)
chr8 (92-248)||(8878227-8878384)
chr8 (17-58)||(8878173-8878214)
chr8 (199-253)||(8841734-8841787)
chr8 (200-253)||(23769885-23769937)
chr8 (200-253)||(29266878-29266930)
chr8 (201-253)||(5110396-5110447)
chr8 (201-253)||(18173513-18173564)
chr8 (201-253)||(22273989-22274040)
chr8 (201-253)||(26063769-26063820)
chr8 (201-253)||(32800192-32800243)
chr8 (201-253)||(42309444-42309495)
[»] chr7 (14 HSPs)
chr7 (199-253)||(19919269-19919322)
chr7 (201-253)||(21751977-21752028)
chr7 (201-253)||(29165492-29165543)
chr7 (190-253)||(18773659-18773720)
chr7 (202-253)||(46414334-46414384)
chr7 (199-253)||(6345135-6345188)
chr7 (199-253)||(42913238-42913291)
chr7 (201-253)||(2007204-2007255)
chr7 (201-253)||(22202652-22202703)
chr7 (201-253)||(22235118-22235169)
chr7 (201-253)||(22478789-22478840)
chr7 (201-253)||(38228623-38228674)
chr7 (201-253)||(43301933-43301984)
chr7 (201-253)||(47273063-47273114)
[»] chr6 (6 HSPs)
chr6 (199-253)||(17438427-17438480)
chr6 (200-253)||(5038964-5039016)
chr6 (193-253)||(8440088-8440147)
chr6 (199-253)||(4605561-4605614)
chr6 (201-253)||(1336534-1336585)
chr6 (201-253)||(35117114-35117165)
[»] chr1 (18 HSPs)
chr1 (188-253)||(46947484-46947548)
chr1 (17-71)||(36982363-36982418)
chr1 (191-253)||(11192711-11192772)
chr1 (191-248)||(10556054-10556110)
chr1 (199-248)||(12968075-12968124)
chr1 (199-248)||(13565950-13565998)
chr1 (201-253)||(1377127-1377178)
chr1 (201-253)||(2969684-2969735)
chr1 (201-253)||(3792909-3792960)
chr1 (201-253)||(8887369-8887420)
chr1 (201-253)||(9840417-9840468)
chr1 (201-253)||(11192263-11192314)
chr1 (201-253)||(15368998-15369049)
chr1 (201-253)||(19893677-19893728)
chr1 (201-253)||(29823869-29823920)
chr1 (201-253)||(33524269-33524320)
chr1 (201-253)||(38213088-38213139)
chr1 (201-253)||(47843879-47843930)
[»] chr5 (15 HSPs)
chr5 (201-253)||(4000953-4001004)
chr5 (201-244)||(8105648-8105690)
chr5 (201-244)||(20205464-20205506)
chr5 (199-253)||(39026116-39026169)
chr5 (200-253)||(26338852-26338904)
chr5 (191-248)||(31110189-31110245)
chr5 (200-253)||(41044941-41044993)
chr5 (201-253)||(1008023-1008074)
chr5 (201-253)||(5244742-5244793)
chr5 (205-253)||(18282844-18282891)
chr5 (201-253)||(26910453-26910504)
chr5 (201-253)||(28137375-28137426)
chr5 (200-248)||(34598148-34598195)
chr5 (201-253)||(41651083-41651134)
chr5 (201-253)||(43401175-43401226)
[»] chr4 (18 HSPs)
chr4 (201-253)||(49388614-49388666)
chr4 (201-248)||(26487788-26487834)
chr4 (199-253)||(2904625-2904678)
chr4 (199-253)||(28197747-28197800)
chr4 (199-253)||(39261861-39261914)
chr4 (199-253)||(42058941-42058994)
chr4 (199-244)||(8840377-8840422)
chr4 (199-248)||(28984922-28984970)
chr4 (201-253)||(5497102-5497153)
chr4 (201-253)||(8080522-8080573)
chr4 (201-253)||(19689449-19689500)
chr4 (201-253)||(24285205-24285256)
chr4 (201-253)||(27553016-27553067)
chr4 (201-253)||(29771989-29772040)
chr4 (201-253)||(36703858-36703909)
chr4 (201-253)||(42512138-42512189)
chr4 (201-253)||(47404905-47404956)
chr4 (201-253)||(49332433-49332484)
[»] chr3 (11 HSPs)
chr3 (201-253)||(27482858-27482909)
chr3 (199-253)||(47757691-47757745)
chr3 (195-244)||(7922810-7922858)
chr3 (199-244)||(28588899-28588943)
chr3 (201-253)||(20043849-20043900)
chr3 (202-254)||(27107882-27107933)
chr3 (201-253)||(32596907-32596958)
chr3 (201-253)||(46888213-46888264)
chr3 (201-253)||(49083766-49083817)
chr3 (201-253)||(49408422-49408473)
chr3 (201-253)||(53594330-53594381)
[»] chr2 (11 HSPs)
chr2 (201-253)||(9437478-9437529)
chr2 (192-253)||(27299782-27299842)
chr2 (201-250)||(33714344-33714392)
chr2 (201-253)||(10313025-10313076)
chr2 (201-253)||(14391314-14391365)
chr2 (201-253)||(27251982-27252033)
chr2 (201-253)||(40768167-40768219)
chr2 (201-253)||(41245622-41245673)
chr2 (201-253)||(42434151-42434202)
chr2 (201-253)||(43942710-43942761)
chr2 (201-253)||(45070669-45070720)
[»] scaffold0182 (1 HSPs)
scaffold0182 (201-252)||(18123-18173)
[»] scaffold0041 (1 HSPs)
scaffold0041 (192-253)||(28074-28134)
[»] scaffold0076 (1 HSPs)
scaffold0076 (201-253)||(16587-16638)


Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 92 - 248
Target Start/End: Original strand, 8878227 - 8878384
Alignment:
Q  92 ctcttaggttgttgttaatatattgtgtcaccatgttgcatttgtgataagtgattgctttaagg-acatcatagcacttgacaataatttaaagagaca 190  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| || ||    
T  8878227 ctcttaggttgttgttaatacattgtgtcaccatgttgcatttgtgataagtgattgctttaagggacatcatagcacttgacaataattgaaaaagtca 8878326  T
Q  191 atttattcttgggttaaatatgttttttggcccctaaaaatatatcaacttttcattt 248  Q
    ||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||    
T  8878327 atttattcttgggttaaatatgttttttggcccttataaatataccaacttttcattt 8878384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 8878173 - 8878214
Alignment:
Q  17 gttgcatgcctaaagctggattcgaacccgagaccttgttaa 58  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  8878173 gttgcatgcctaaagctggattcgaacccgagaccttgttaa 8878214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 8841734 - 8841787
Alignment:
Q  199 ttgggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||||| || ||||| |||||| |||||||||||||| ||||    
T  8841734 ttgggttaaatatgttttt-ggtccctataaatatgtcaacttttcattttagtc 8841787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 23769937 - 23769885
Alignment:
Q  200 tgggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    |||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  23769937 tgggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 23769885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 29266930 - 29266878
Alignment:
Q  200 tgggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    |||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  29266930 tgggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 29266878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 5110396 - 5110447
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  5110396 gggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 5110447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 18173564 - 18173513
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| |||||| |||||||||||||| ||||    
T  18173564 gggttaaatatgttttt-ggtccctataaatatgtcaacttttcattttagtc 18173513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 22273989 - 22274040
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| ||| |||| ||||||||||||||||| ||| ||||    
T  22273989 gggttaaatatgttttt-ggctcctataaatatatcaacttttcgttttagtc 22274040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 26063820 - 26063769
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  26063820 gggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 26063769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 32800243 - 32800192
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  32800243 gggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 32800192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 42309444 - 42309495
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||| ||||||||||||| ||||    
T  42309444 gggttaaatatgttttt-ggtccctataaatataccaacttttcattttagtc 42309495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 19919269 - 19919322
Alignment:
Q  199 ttgggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||||| || ||||| ||||||||||||||||||||| ||||    
T  19919269 ttgggttaaatatgttttt-ggtccctataaatatatcaacttttcattttagtc 19919322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 21752028 - 21751977
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||||||||||||||||| ||||    
T  21752028 gggttaaatatgttttt-ggtccctataaatatatcaacttttcattttagtc 21751977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 29165543 - 29165492
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||||||||||||||||| ||||    
T  29165543 gggttaaatatgttttt-ggtccctataaatatatcaacttttcattttagtc 29165492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 18773720 - 18773659
Alignment:
Q  190 aatttattcttgggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    |||||||| ||||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  18773720 aatttatt-ttgggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 18773659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 46414384 - 46414334
Alignment:
Q  202 ggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    |||||||||||||||| || ||||| ||||||||||||||||||||| ||||    
T  46414384 ggttaaatatgttttt-ggtccctataaatatatcaacttttcattttagtc 46414334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 6345135 - 6345188
Alignment:
Q  199 ttgggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||||| || ||||| ||||||| ||||||||||||| ||||    
T  6345135 ttgggttaaatatgttttt-ggtccctataaatataccaacttttcattttagtc 6345188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 42913238 - 42913291
Alignment:
Q  199 ttgggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||||| || ||||| |||||| |||||||||||||| ||||    
T  42913238 ttgggttaaatatgttttt-ggtccctataaatatgtcaacttttcattttagtc 42913291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 2007255 - 2007204
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| |||||||| |||||||||||| ||||    
T  2007255 gggttaaatatgttttt-ggtccctataaatatataaacttttcattttagtc 2007204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 22202703 - 22202652
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  22202703 gggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 22202652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 22235118 - 22235169
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  22235118 gggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 22235169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 22478789 - 22478840
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  22478789 gggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 22478840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 38228623 - 38228674
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| |||||| |||||||||||||| ||||    
T  38228623 gggttaaatatgttttt-ggtccctataaatatgtcaacttttcattttagtc 38228674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 43301984 - 43301933
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  43301984 gggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 43301933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 47273114 - 47273063
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  47273114 gggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 47273063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 17438427 - 17438480
Alignment:
Q  199 ttgggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||||| || ||||| ||||||| ||||||||||||||||||    
T  17438427 ttgggttaaatatgttttt-ggtccctataaatataccaacttttcatttcagtc 17438480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 5038964 - 5039016
Alignment:
Q  200 tgggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    |||||||||||||||||| || ||||| ||||||||||||||||||||| ||||    
T  5038964 tgggttaaatatgttttt-ggtccctataaatatatcaacttttcattttagtc 5039016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 8440088 - 8440147
Alignment:
Q  193 ttattcttgggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||| ||||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  8440088 ttatttttgggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 8440147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 4605561 - 4605614
Alignment:
Q  199 ttgggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  4605561 ttgggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 4605614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 1336534 - 1336585
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  1336534 gggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 1336585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 35117114 - 35117165
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  35117114 gggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 35117165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 253
Target Start/End: Original strand, 46947484 - 46947548
Alignment:
Q  188 acaatttattcttgggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    |||| |||||||||| |||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  46947484 acaaattattcttggattaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 46947548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 36982418 - 36982363
Alignment:
Q  17 gttgcatgcctaaagctggattcgaacccgagacctt-gttaaactagaagcgacc 71  Q
    |||||||| |||| |||| |||||||||||||||||| ||||||||||||| ||||    
T  36982418 gttgcatgtctaaggctgaattcgaacccgagaccttggttaaactagaagagacc 36982363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 11192772 - 11192711
Alignment:
Q  191 atttattcttgggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    |||||||  |||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  11192772 atttattaatgggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 11192711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 10556110 - 10556054
Alignment:
Q  191 atttattcttgggttaaatatgttttttggcccctaaaaatatatcaacttttcattt 248  Q
    ||||||| | ||||||||||||||||| || ||||| ||||||| |||||||||||||    
T  10556110 atttattttagggttaaatatgttttt-ggtccctataaatataccaacttttcattt 10556054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 12968075 - 12968124
Alignment:
Q  199 ttgggttaaatatgttttttggcccctaaaaatatatcaacttttcattt 248  Q
    |||||||||||||||||||| | | ||| |||||||||||||||| ||||    
T  12968075 ttgggttaaatatgtttttttgtctctataaatatatcaactttttattt 12968124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 13565950 - 13565998
Alignment:
Q  199 ttgggttaaatatgttttttggcccctaaaaatatatcaacttttcattt 248  Q
    |||||||||||||||||||||  || || |||||||||||||||||||||    
T  13565950 ttgggttaaatatgttttttgttcc-tataaatatatcaacttttcattt 13565998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 1377127 - 1377178
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||| ||||||||||||| ||||    
T  1377127 gggttaaatatgttttt-ggtccctataaatataccaacttttcattttagtc 1377178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 2969684 - 2969735
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  2969684 gggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 2969735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 3792909 - 3792960
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| |||||| |||||||||||||| ||||    
T  3792909 gggttaaatatgttttt-ggtccctataaatatgtcaacttttcattttagtc 3792960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 8887369 - 8887420
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  8887369 gggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 8887420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 9840468 - 9840417
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  9840468 gggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 9840417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 11192263 - 11192314
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| |||||| |||||||||||||| ||||    
T  11192263 gggttaaatatgttttt-ggtccctataaatatgtcaacttttcattttagtc 11192314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 15368998 - 15369049
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  15368998 gggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 15369049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 19893677 - 19893728
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| |||||| |||||||||||||| ||||    
T  19893677 gggttaaatatgttttt-ggtccctataaatatgtcaacttttcattttagtc 19893728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 29823920 - 29823869
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||| ||||||||||||| ||||    
T  29823920 gggttaaatatgttttt-ggtccctataaatataccaacttttcattttagtc 29823869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 33524320 - 33524269
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| |||||| |||||||||||||| ||||    
T  33524320 gggttaaatatgttttt-ggtccctataaatatgtcaacttttcattttagtc 33524269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 38213088 - 38213139
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  38213088 gggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 38213139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 47843879 - 47843930
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  47843879 gggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 47843930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 4001004 - 4000953
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||||||||||||||||| ||||    
T  4001004 gggttaaatatgttttt-ggtccctataaatatatcaacttttcattttagtc 4000953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 244
Target Start/End: Complemental strand, 8105690 - 8105648
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttc 244  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  8105690 gggttaaatatgttttt-ggcccctataaatatatcaacttttc 8105648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 244
Target Start/End: Original strand, 20205464 - 20205506
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttc 244  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||    
T  20205464 gggttaaatatgttttttgtccc-taaaaatatatcaacttttc 20205506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 39026169 - 39026116
Alignment:
Q  199 ttgggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  39026169 ttgggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 39026116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 26338852 - 26338904
Alignment:
Q  200 tgggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    |||||||||||||||||| || ||||| |||||| |||||||||||||| ||||    
T  26338852 tgggttaaatatgttttt-ggtccctataaatatgtcaacttttcattttagtc 26338904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 31110245 - 31110189
Alignment:
Q  191 atttattcttgggttaaatatgttttttggcccctaaaaatatatcaacttttcattt 248  Q
    ||||||| ||||||||||||||| |||| | ||||| |||||| ||||||||||||||    
T  31110245 atttatttttgggttaaatatgt-ttttagtccctataaatatgtcaacttttcattt 31110189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 41044993 - 41044941
Alignment:
Q  200 tgggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    |||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  41044993 tgggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 41044941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 1008074 - 1008023
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  1008074 gggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 1008023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 5244793 - 5244742
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||| ||||||||||||| ||||    
T  5244793 gggttaaatatgttttt-ggtccctataaatataccaacttttcattttagtc 5244742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 18282844 - 18282891
Alignment:
Q  205 taaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||| || ||||| ||||||||||||||||||||| ||||    
T  18282844 taaatatgttttt-ggtccctataaatatatcaacttttcattttagtc 18282891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 26910453 - 26910504
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  26910453 gggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 26910504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 28137375 - 28137426
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  28137375 gggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 28137426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 34598148 - 34598195
Alignment:
Q  200 tgggttaaatatgttttttggcccctaaaaatatatcaacttttcattt 248  Q
    |||||||||||||||||| || || || |||||||||||||||||||||    
T  34598148 tgggttaaatatgttttt-ggtccttataaatatatcaacttttcattt 34598195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 41651083 - 41651134
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||| ||||||||||||| ||||    
T  41651083 gggttaaatatgttttt-ggtccctataaatataccaacttttcattttagtc 41651134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 43401175 - 43401226
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| |||||| |||||||||||||| ||||    
T  43401175 gggttaaatatgttttt-ggtccctataaatatgtcaacttttcattttagtc 43401226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 49388666 - 49388614
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    |||||||||||||||||| | ||||| |||||| |||||||||||||| ||||    
T  49388666 gggttaaatatgtttttttgtccctataaatatgtcaacttttcattttagtc 49388614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 248
Target Start/End: Original strand, 26487788 - 26487834
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcattt 248  Q
    ||||||||||||||||| || ||||| |||||||||||||||||||||    
T  26487788 gggttaaatatgttttt-ggtccctataaatatatcaacttttcattt 26487834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 2904625 - 2904678
Alignment:
Q  199 ttgggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  2904625 ttgggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 2904678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 28197747 - 28197800
Alignment:
Q  199 ttgggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||||| || ||||| ||||||| ||||||||||||| ||||    
T  28197747 ttgggttaaatatgttttt-ggtccctataaatataccaacttttcattttagtc 28197800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 39261914 - 39261861
Alignment:
Q  199 ttgggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||||| || ||||| ||||||| ||||||||||||| ||||    
T  39261914 ttgggttaaatatgttttt-ggtccctataaatataccaacttttcattttagtc 39261861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 42058941 - 42058994
Alignment:
Q  199 ttgggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    |||| |||||||||||||||| ||| || ||||||||||||||||||||| ||||    
T  42058941 ttggattaaatatgttttttgtccc-tataaatatatcaacttttcattttagtc 42058994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 8840377 - 8840422
Alignment:
Q  199 ttgggttaaatatgttttttggcccctaaaaatatatcaacttttc 244  Q
    |||||||||||||||||||| | || || |||||||||||||||||    
T  8840377 ttgggttaaatatgtttttttgtccttataaatatatcaacttttc 8840422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 28984922 - 28984970
Alignment:
Q  199 ttgggttaaatatgttttttggcccctaaaaatatatcaacttttcattt 248  Q
    ||||||||||||||||||| || ||||| |||||| ||||||||||||||    
T  28984922 ttgggttaaatatgttttt-ggtccctataaatatgtcaacttttcattt 28984970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 5497153 - 5497102
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| |  ||||| ||||||||||||||||||||| ||||    
T  5497153 gggttaaatatgttttt-gatccctataaatatatcaacttttcattttagtc 5497102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 8080573 - 8080522
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  8080573 gggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 8080522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 19689449 - 19689500
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  19689449 gggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 19689500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 24285256 - 24285205
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  24285256 gggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 24285205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 27553016 - 27553067
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||| ||||||||||||| ||||    
T  27553016 gggttaaatatgttttt-ggtccctataaatataccaacttttcattttagtc 27553067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 29772040 - 29771989
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  29772040 gggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 29771989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 36703909 - 36703858
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  36703909 gggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 36703858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 42512189 - 42512138
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| |||||| |||||||||||||| ||||    
T  42512189 gggttaaatatgttttt-ggtccctataaatatgtcaacttttcattttagtc 42512138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 47404905 - 47404956
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||| ||||||||||||| ||||    
T  47404905 gggttaaatatgttttt-ggtccctataaatataccaacttttcattttagtc 47404956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 49332433 - 49332484
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  49332433 gggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 49332484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 27482858 - 27482909
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||||||| | |||||||||||||||||||| ||| ||||    
T  27482858 gggttaaatatgttttttggctc-taaaaatatatcaacttttcgttttagtc 27482909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 47757745 - 47757691
Alignment:
Q  199 ttgggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    |||||||||||||||||||| | || || ||||||||||| ||||||||| ||||    
T  47757745 ttgggttaaatatgtttttttgtccttataaatatatcaaattttcattttagtc 47757691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 7922810 - 7922858
Alignment:
Q  195 attcttgggttaaatatgttttttggcccctaaaaatatatcaacttttc 244  Q
    ||||| |||||||||||||||||| | ||||| |||||||||||||||||    
T  7922810 attctagggttaaatatgtttttt-gtccctataaatatatcaacttttc 7922858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 28588943 - 28588899
Alignment:
Q  199 ttgggttaaatatgttttttggcccctaaaaatatatcaacttttc 244  Q
    ||||||||||||||||||| || ||||| |||||||||||||||||    
T  28588943 ttgggttaaatatgttttt-ggtccctataaatatatcaacttttc 28588899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 20043900 - 20043849
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  20043900 gggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 20043849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 27107933 - 27107882
Alignment:
Q  202 ggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtcg 254  Q
    |||||||||||||||| || ||||| ||||||||||||||||| ||| |||||    
T  27107933 ggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtcg 27107882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 32596907 - 32596958
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  32596907 gggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 32596958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 46888264 - 46888213
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||||| ||| || ||||||||||||||||| ||| ||||    
T  46888264 gggttaaatatgttttttgtccc-tataaatatatcaacttttcgttttagtc 46888213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 49083817 - 49083766
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||| |||||| ||||| |||||||| |||||||| ||||||||    
T  49083817 gggttaaatatgt-ttttggtccctataaatatattaacttttcgtttcagtc 49083766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 49408422 - 49408473
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||| ||||||||||||| ||||    
T  49408422 gggttaaatatgttttt-ggtccctataaatataccaacttttcattttagtc 49408473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 53594330 - 53594381
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  53594330 gggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 53594381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 9437529 - 9437478
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||||||||||||||||| ||||    
T  9437529 gggttaaatatgttttt-ggtccctataaatatatcaacttttcattttagtc 9437478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 253
Target Start/End: Complemental strand, 27299842 - 27299782
Alignment:
Q  192 tttattcttgggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    |||||| ||||||||||||||| |||||| ||||| ||||||| ||||||||| ||| ||||    
T  27299842 tttatttttgggttaaatatgt-ttttggtccctagaaatataccaacttttcgttttagtc 27299782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 33714344 - 33714392
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttca 250  Q
    ||||||||||||||||| || | ||| |||||||||||||||||||||||    
T  33714344 gggttaaatatgttttt-ggtctctataaatatatcaacttttcatttca 33714392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 10313025 - 10313076
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    |||||||||||||| || || ||||| ||||||||||||||||||||| ||||    
T  10313025 gggttaaatatgttgtt-ggtccctataaatatatcaacttttcattttagtc 10313076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 14391365 - 14391314
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  14391365 gggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 14391314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 27252033 - 27251982
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  27252033 gggttaaatatgttttt-ggtccctataaatatatcaacttttcgttttagtc 27251982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 40768167 - 40768219
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    |||||||||||||||||| | ||||| ||||||| ||||||| ||||| ||||    
T  40768167 gggttaaatatgtttttttgtccctataaatataccaactttccattttagtc 40768219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 41245622 - 41245673
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||||| ||| || ||||||| ||||||||||||| ||||    
T  41245622 gggttaaatatgttttttgtccc-tataaatataccaacttttcattttagtc 41245673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 42434202 - 42434151
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||| ||||||||||||| ||||    
T  42434202 gggttaaatatgttttt-ggtccctataaatataccaacttttcattttagtc 42434151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 43942710 - 43942761
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||| |||||||| ||||| ||||||||||||||||| ||| ||||    
T  43942710 gggttaaatat-ttttttggtccctataaatatatcaacttttcgttttagtc 43942761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 45070720 - 45070669
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| || ||||| ||||||| ||||||||||||| ||||    
T  45070720 gggttaaatatgttttt-ggtccctataaatataccaacttttcattttagtc 45070669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 252
Target Start/End: Complemental strand, 18173 - 18123
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagt 252  Q
    ||||||||||||||||| || ||||| |||||||||||||||| ||||||||    
T  18173 gggttaaatatgttttt-ggtccctataaatatatcaactttttatttcagt 18123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 253
Target Start/End: Original strand, 28074 - 28134
Alignment:
Q  192 tttattcttgggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    |||||| | |||||||||||| ||||||| ||||| |||||| |||||||||| ||||||||    
T  28074 tttattttagggttaaatatg-tttttggtccctataaatatgtcaacttttcctttcagtc 28134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 16587 - 16638
Alignment:
Q  201 gggttaaatatgttttttggcccctaaaaatatatcaacttttcatttcagtc 253  Q
    ||||||||||||||||| ||  |||| ||||||||||||||||||||| ||||    
T  16587 gggttaaatatgttttt-ggttcctataaatatatcaacttttcattttagtc 16638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University