View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19972_high_18 (Length: 224)
Name: NF19972_high_18
Description: NF19972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19972_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 52100359 - 52100285
Alignment:
| Q |
1 |
ttaataataatgtcttggtttgattactttaaattcataaaaatccgaaattaatcatattaatatgaagaatta |
75 |
Q |
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| T |
52100359 |
ttaataataatgtcttggtttgattactttaaattcataaaaatccgaaattaatcatattaatatgaagaatta |
52100285 |
T |
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Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 52100294 - 52100237
Alignment:
| Q |
92 |
tgaagaattaaaatgttcaaactgtacttgtttgtagagaaaacataaactggtgtat |
149 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52100294 |
tgaagaattaaaatgttcaaactgtacttgtttgtagagaaaacataaactggtgtat |
52100237 |
T |
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